Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2806 ATGCTGGGAATGACTTCAAAACTCAACCATAGAGATGATGGCTCTAATGGGGATAGTGCATCAAAGCCAATCCACTTTTTGAGGATCATGCACCCTGACAATCTTCTGCAAGGAAAGCTAAGGCTTCCAGCAGAGTTTGTAAACAAATATGGAAAACACTTATCCAACACAATGTTTCTTAAGCTTCCAAACGGTGCAGAATGGAGAGTAAATTTGGAGAAACGTGATGGTAGAGTTTGGTTTCAAGAAGGTTGGAAAAAGTTTGTGGAGCATCACTCCCTTGCACATGGGCACCTATTGGTTTTCAAATATGATGGAACATTCCATTTTCATGTACTCATCTTTGATCCTAGTGCCAATGAAATAGACTACCCTGTTAACAAAGCAAATCACAAAAGGGTCAGAATTAGTAGTGAAGAAATTCAACCTCCCACGACGTGCAAAACAAGTGGAAATAAGAGGAGTAATTCCAATTTGCAGGACAATGCCTTTCATCAGAAAGTCAGAGACCACAAAGGTAGGTACGAAAGTCCAAGTGAAGGGAAAAGAAACATGGAAGCTGCTGGGAGTATTTCCTTCACAGTGAGAATGAAATCAAGCTCTAAGCAGCACATGTATCTTCCAAAGGACTCACTGAAGGGATACATCAAAGGTGGTGAACAATATGTCAAGCTTCTGGTTGGGGAGAGATCATGGAGGGTTAAATTGGTCCATTACAAAAATCGATCTTCATGTTTCTTTAGTGCAAATTGGCCAGCTTTTGCAAGGGAAAACGATTTAAAAGAAGGAGATGCTTGCTGGTTCCAACTCCTAAACAGTAGTGATGACATAGTGATGAATGTTACCATTTCTAGAGAGGGACACTAA 867 0.406 MLGMTSKLNHRDDGSNGDSASKPIHFLRIMHPDNLLQGKLRLPAEFVNKYGKHLSNTMFLKLPNGAEWRVNLEKRDGRVWFQEGWKKFVEHHSLAHGHLLVFKYDGTFHFHVLIFDPSANEIDYPVNKANHKRVRISSEEIQPPTTCKTSGNKRSNSNLQDNAFHQKVRDHKGRYESPSEGKRNMEAAGSISFTVRMKSSSKQHMYLPKDSLKGYIKGGEQYVKLLVGERSWRVKLVHYKNRSSCFFSANWPAFARENDLKEGDACWFQLLNSSDDIVMNVTISREGH* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2806 288 MobiDBLite consensus disorder prediction 137 183 - -
Gso8g2806 288 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Gso8g2806 288 CDD B3_DNA 192 285 IPR003340 GO:0003677
Gso8g2806 288 SMART B3_2 193 287 IPR003340 GO:0003677
Gso8g2806 288 SMART B3_2 26 118 IPR003340 GO:0003677
Gso8g2806 288 CDD B3_DNA 25 116 IPR003340 GO:0003677
Gso8g2806 288 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 5 286 - -
Gso8g2806 288 Gene3D - 19 119 IPR015300 -
Gso8g2806 288 SUPERFAMILY DNA-binding pseudobarrel domain 21 118 IPR015300 -
Gso8g2806 288 Pfam B3 DNA binding domain 29 116 IPR003340 GO:0003677
Gso8g2806 288 Pfam B3 DNA binding domain 196 285 IPR003340 GO:0003677
Gso8g2806 288 PANTHER B3 DOMAIN-CONTAINING 5 286 - -
Gso8g2806 288 MobiDBLite consensus disorder prediction 164 181 - -
Gso8g2806 288 ProSiteProfiles B3 DNA-binding domain profile. 190 287 IPR003340 GO:0003677
Gso8g2806 288 MobiDBLite consensus disorder prediction 139 163 - -
Gso8g2806 288 SUPERFAMILY DNA-binding pseudobarrel domain 192 279 IPR015300 -
Gso8g2806 288 Gene3D - 177 287 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2806 Gso-Chr8 45779474 45781512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2806 26 285 B3 DNA Binding Superfamily AT3G18990 28.443 1.57e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso8g2806 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2806 - - gmx:100793986 597.43