Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2805 ATGACTTCACAGCTTGACGATGGAGATGGCTCCTACGGTTACAGTGCAACAAAGCCAATCCACTTTTTCAGGATCATGCTCCATGAGAACCTTCTGCAAGGAAATCTAAGGCTTCCGGAGAAGTTTGTGAGGAAATATGGAAATCACTTATCCAACTCAATGCTTCTTAAGCTTCCAAACGGTGTAGAATGGAAGGTAAATTTGGAGAAACGTGATGGTAGTGTTTGGTTTCAAGAAGGTTGGAAAGACTTTGCAGAGTATTACTCTCTGGCCAATGGGCACCTATTGGGTTTTAGATACGATGGAACATCCCATTTTCATGTATTCATCTGTGATATGAGTACCATGGAAATAGAGTACCCTGTCAACAAAGCAAATCACAAAAGACCAAGCATTAATAGTGAAGAAAGTCAACCACATAAGACACAGAAAACAGATGAAAATATGAACAAGAGTAATTCCAATTTGCAGGACACTGACATTCATAAAGAAGCCAGAGACCACAAAGGTAAGGGAAACATGGAAGGGTCATCCATTAGTAACTGTGGAACTCATGAAGCAGCTGGGAATACTTCATTCACCGTGATAATGAAATCAAGCTACTATCTGCCAAAGAGCCCACTGAAGCGCTATACCAAATCTGGTGAACAATATGTCAAGCTTTTGGTTGGGGACAGATCATGGAGGGTTAAAGTGATCTATTGTCGAAATAAAACATTGAGTTACTTTACTGGAGATTGGCTAGTTTTTGCAAAAGAAAATGATTTAAAAGAAGGAGATGCTTGCTTGTTCCAACTTCTAAGCAATGGTGATGGCATCGTGATGAAGGTTTCTATTTCCAGACGGGTTTAA 852 0.4002 MTSQLDDGDGSYGYSATKPIHFFRIMLHENLLQGNLRLPEKFVRKYGNHLSNSMLLKLPNGVEWKVNLEKRDGSVWFQEGWKDFAEYYSLANGHLLGFRYDGTSHFHVFICDMSTMEIEYPVNKANHKRPSINSEESQPHKTQKTDENMNKSNSNLQDTDIHKEARDHKGKGNMEGSSISNCGTHEAAGNTSFTVIMKSSYYLPKSPLKRYTKSGEQYVKLLVGDRSWRVKVIYCRNKTLSYFTGDWLVFAKENDLKEGDACLFQLLSNGDGIVMKVSISRRV* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2805 283 SUPERFAMILY DNA-binding pseudobarrel domain 190 276 IPR015300 -
Gso8g2805 283 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 2 281 - -
Gso8g2805 283 Gene3D - 180 283 IPR015300 -
Gso8g2805 283 SMART B3_2 22 114 IPR003340 GO:0003677
Gso8g2805 283 SMART B3_2 193 283 IPR003340 GO:0003677
Gso8g2805 283 CDD B3_DNA 21 112 IPR003340 GO:0003677
Gso8g2805 283 Gene3D - 14 115 IPR015300 -
Gso8g2805 283 PANTHER B3 DOMAIN-CONTAINING 2 281 - -
Gso8g2805 283 MobiDBLite consensus disorder prediction 126 181 - -
Gso8g2805 283 ProSiteProfiles B3 DNA-binding domain profile. 186 283 IPR003340 GO:0003677
Gso8g2805 283 CDD B3_DNA 192 281 IPR003340 GO:0003677
Gso8g2805 283 MobiDBLite consensus disorder prediction 129 147 - -
Gso8g2805 283 Pfam B3 DNA binding domain 197 282 IPR003340 GO:0003677
Gso8g2805 283 Pfam B3 DNA binding domain 23 112 IPR003340 GO:0003677
Gso8g2805 283 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Gso8g2805 283 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Gso8g2805 283 MobiDBLite consensus disorder prediction 157 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2805 Gso-Chr8 45776543 45778186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2805 19 281 B3 DNA Binding Superfamily AT3G18990 25.369 6.50e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso8g2805 B3 3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2805 - - gmx:102669906 585.489