Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2790 ATGAAGATCACTGTCATGACTGCTGATGAACAAATCATCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGGCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAAGTTAGGAATTCTGAGAAGTTGAGCGCTCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTATCTGATGCTGGCGCTGGTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATACTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATTTGAACAAATTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAGGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCTGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTCTTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTCGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAATTTCATCAGGCAGCAATAATCCATCAACAGGAGGCCACTCTTCTGGTGGAGCTTCTGGTGATAAGGCTAAGGATTCTGAGTTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGATTTGAAAGAAATGCAGTTATACAAGCTCTTCAATTATTCAATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAG 1233 0.4258 MKITVMTADEQIITLDVDPHESVENVKALLEVETSVALQQQQLLFNGKEVRNSEKLSALGVKDDDLLMMVSDAGAGAAASSGSTNDLSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNKLQEVLRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGQISSGSNNPSTGGHSSGGASGDKAKDSEFEAKVAKLVELGFERNAVIQALQLFNGNEEQAAGFLFGG* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2790 410 Gene3D - 1 85 - -
Gso8g2790 410 MobiDBLite consensus disorder prediction 340 360 - -
Gso8g2790 410 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gso8g2790 410 MobiDBLite consensus disorder prediction 338 367 - -
Gso8g2790 410 Coils Coil 134 154 - -
Gso8g2790 410 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Gso8g2790 410 PANTHER AT13091P 1 408 - -
Gso8g2790 410 SUPERFAMILY UBA-like 361 410 IPR009060 GO:0005515
Gso8g2790 410 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Gso8g2790 410 SMART uba_6 372 409 IPR015940 -
Gso8g2790 410 SUPERFAMILY Acid proteases 187 302 IPR021109 -
Gso8g2790 410 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 408 - -
Gso8g2790 410 CDD UBA_scDdi1_like 373 408 - -
Gso8g2790 410 Pfam UBA/TS-N domain 373 406 IPR015940 -
Gso8g2790 410 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Gso8g2790 410 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Gso8g2790 410 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Gso8g2790 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 410 IPR015940 -
Gso8g2790 410 SMART ubq_7 1 72 IPR000626 GO:0005515
Gso8g2790 410 Gene3D Acid Proteases 180 326 IPR021109 -
Gso8g2790 410 Gene3D - 343 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2790 Gso-Chr8 45658231 45676361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2790 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 3.49e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2790 K11885 - gmx:100779464 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2790 8 45658231 45676361 Gso8g2790 8 45658231 45676361 ECH
Gso18g0618 18 6763847 6772199 Gso8g2790 8 45658231 45676361 GST