Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2761 ATGTCGTATTCAAGGAGATCAAGGTATTCTCGTTCTCCTTCTCCATACAAGCGATACAGTAGGTCTGTGTCCAGGTCTCTCTCAAGGACAAGCTCCAGAAGCCGTTCAAGGAGTTTATCAAGAGATGCAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAACATTTTTCTGCTGAGGGAAAAGTGATAGATGTCCATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGCTTTGTGACAATGGAGACTCTTGAGGAGGCAGATCGATGTGTAAAGTATCTGAATCGCTCAGTACTTGAAGGGCGTGTCATCACGGTGGAGAAGGCTAAAAGACGACGTGGTCGAACCCCAACACCAGGGAAGTATCTAGGGCTGAGAACTATTCGTGCTCAACGGCGTTCTCCAAGTGACTCTCCTCGTCGCTCCCCTAGCTATTCTCCTTATAGAAGAAGCTATAGCCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATAGGAGGAGGAAGTCAAACTATCCATATCACTCTAGGCGAAGGTCATACTCTCCATACTACAGCCGGTACAGGTCTTATTCTCGATATGATCGACACAGGTCATATTCTCGCTCTTGCTCTCCTTATAGCAGGTCACCTGTCAGCATCCGTGACAGATCATACTCTCCTTATGACTCACGATATGACTCACCGGATGATCACTCCTACAGAAGGCACCATTACAGATCTGTTTCACGAGGTGCCTCGCCTGATGATCGCTATTATAGAAGGCACCATTACAGGTCTGTTTCTCGAAGTGCCTCACCCAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCTCGGAGTGCCACTCCTGTTTCAAAGAGGAGCAACTCGCGAAGTGTGTCCCCCAGGTCAAGGAAGAGTCATTCAAGAAGCTCCAAGAGGAGTGGCAAATATGAGAAACACTACTCAAGAAGCCCGAGTGTGAGTGCAAGTTCAAGATCAGTATCGAGGTCAAATACTCCAAGGTCTACCTCTCCTTCAACTTGA 1089 0.4775 MSYSRRSRYSRSPSPYKRYSRSVSRSLSRTSSRSRSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFSAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADRCVKYLNRSVLEGRVITVEKAKRRRGRTPTPGKYLGLRTIRAQRRSPSDSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYRRRKSNYPYHSRRRSYSPYYSRYRSYSRYDRHRSYSRSCSPYSRSPVSIRDRSYSPYDSRYDSPDDHSYRRHHYRSVSRGASPDDRYYRRHHYRSVSRSASPRPRRRSRRSYSRSATPVSKRSNSRSVSPRSRKSHSRSSKRSGKYEKHYSRSPSVSASSRSVSRSNTPRSTSPST* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2761 362 MobiDBLite consensus disorder prediction 216 362 - -
Gso8g2761 362 MobiDBLite consensus disorder prediction 124 199 - -
Gso8g2761 362 MobiDBLite consensus disorder prediction 313 329 - -
Gso8g2761 362 PANTHER TRANSFORMER-2-RELATED 7 281 - -
Gso8g2761 362 Gene3D - 2 132 IPR012677 -
Gso8g2761 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Gso8g2761 362 MobiDBLite consensus disorder prediction 152 179 - -
Gso8g2761 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 119 IPR000504 GO:0003723
Gso8g2761 362 MobiDBLite consensus disorder prediction 278 298 - -
Gso8g2761 362 MobiDBLite consensus disorder prediction 224 238 - -
Gso8g2761 362 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 7 281 - -
Gso8g2761 362 CDD RRM_RBMX_like 47 126 - -
Gso8g2761 362 MobiDBLite consensus disorder prediction 1 49 - -
Gso8g2761 362 MobiDBLite consensus disorder prediction 241 277 - -
Gso8g2761 362 MobiDBLite consensus disorder prediction 1 34 - -
Gso8g2761 362 SMART rrm1_1 49 122 IPR000504 GO:0003723
Gso8g2761 362 MobiDBLite consensus disorder prediction 336 362 - -
Gso8g2761 362 SUPERFAMILY RNA-binding domain, RBD 40 151 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2761 Gso-Chr8 45371996 45375675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2761 49 163 Eukaryotic Initiation Factors Gene Family AT2G36660 31.304 2.35e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2761 - - gmx:100805126 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0589 18 6304655 6308242 Gso8g2761 8 45371996 45375675 GST