Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2726 ATGGACGAAGGTGAGGGAGGCGATCCCATGGATCAGTTCCACCGTAACGAGGCTATATCCGCTGTAGCTGACGACGGTTTCTTGGGCGAGGAGGACGACGATTACGAGGATCTTTACAACGATGTTAATGTCGGCGAAGGGTTTCTTCAATCGTTGCGGAAGAACGAGGATTCGGGGTTTCGGAACGACGTCGTCGAGGACAAGAAGCCGCTGCAGCAGCCGGATCAGGATCCCGTTGTCGGGGTTTCGATACCGGGTGTCGGTGGTGGCGGTGGAAGTGGAGTTGTGGAAGGCAGGGTTTCTGGGAATGTTGATGGGTTACAGAATCAAGGGTTTAGAGGGGGTAATTCTGGTGGAGGAGGTGGATCAGGTGGGCTTAAGGTTGAATTAGGGCAGCCATCTGGGAAATTGAGTGAAATTGAGGAGCAGGGTGGGAATGATGGTACTGATGTGCAGGGGATTGGGCAGCAACCACATGGTGGAGTTGTTGGGAGTGTCGGGAATGAGGGTTTGGTGAGACAAGGTCAAGGTGGTGGAGGAGGAGCAGGGAATGTTAATAGGGTTGGTGGAAATGGTGTTGGGAATAGTGTGAGTACTGTTAATAGTGTTAATACTGGAGGAGGTGGAGGTGTTGTTGTTGTTGGTGGTGGTGCTCCTCCTGGTGGTGGTGGGGGTACCATACTATTTGTGGGTGACTTGCATTGGTGGACTACTGATGCTGAGCTGGAAGCTGAGCTTTCCAAGTATGGGTCTGTGAAGGAGGTGAAGTTTTTCGATGAGAAGGCCAGTGGGAAATCAAAGGGGTATTGCCAGGTTGAGTTTTATGAAGCTTTTGCTGCGACTGCTTGTAAGGAAGGGATGAATGGGCATGTTTTTAATGGGAGACCTTGTGTTGTTGCATTTGCATCGCCTTTTACGGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAGCAGATGAACCAAACTGCTGTTCCTCAGGGAAGGAGGGGACCTGCTGATGCAGGGGCTAAGCCTGGTGGGAGTAATATTTCGACAGGTGGTAATTACCAAGGTGGAGATGGAAATAGAAGTTATGGAAGAGGAGGAGGAGGTAATTGGGGGAGAGGAAATAATCCTGGTATGGGGAATAGAGGGCCTATTAATCCAATGAGGAACAGGGGTGGTGGCATGGGTGGGAGAGGTATAATGGGTAATGGTGGAAATGGGTTTGGACAGGGTATGGGTGCTACTCCACCACTGTTGCATCCTCAGTCCATGATGAATCAGGGTTTTGATCCTGCATTTGGCCCCATGGGTAGAATGGGTAGTTACGGAGGCTTTCCCGGTGCTCCGACACCACCATTCTCTGGGATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCTGTTAATGGTATGGGGATGATGCCCGGATCAGGCATGGATGGTCCTAATATGGGAATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCCAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAGGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGCTCGGAAAGAGACTGGTCTGGTACTTCTGAGAGAAGGTACAGAGATGATAGAGATCAAGGATATGACAGAGATGCACCTAAAGAAAAAGACATGGGCCATGACCATGAATGGTCTGAAAGAAGGCATCGTGATGATAGAGAAACGGGCCGAGAACGATCTCGTGATCGTGACCGTGAACGATCTCGAGACCGTGATCGTGACCGCGAAAGGGATTACCGTGAGCGTGACAGGCACAAAGAAGATAGGGACAGGTATGCAGATCATCACAGGTACAGAGACCGGGAAGCAGAACACGATGATGAGTGGGAGAGGGGACGATCATCAAAGCCTCACAGTAAGTCACGGTTATCGCAAGAGGAGGAACACCATTCTAGGCCAAGAGATGCTGATTATGGGAAGAGGCGGCGGCTTACTTCTGAATAA 2082 0.5072 MDEGEGGDPMDQFHRNEAISAVADDGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNDVVEDKKPLQQPDQDPVVGVSIPGVGGGGGSGVVEGRVSGNVDGLQNQGFRGGNSGGGGGSGGLKVELGQPSGKLSEIEEQGGNDGTDVQGIGQQPHGGVVGSVGNEGLVRQGQGGGGGAGNVNRVGGNGVGNSVSTVNSVNTGGGGGVVVVGGGAPPGGGGGTILFVGDLHWWTTDAELEAELSKYGSVKEVKFFDEKASGKSKGYCQVEFYEAFAATACKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNQTAVPQGRRGPADAGAKPGGSNISTGGNYQGGDGNRSYGRGGGGNWGRGNNPGMGNRGPINPMRNRGGGMGGRGIMGNGGNGFGQGMGATPPLLHPQSMMNQGFDPAFGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPGSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGTSERRYRDDRDQGYDRDAPKEKDMGHDHEWSERRHRDDRETGRERSRDRDRERSRDRDRDRERDYRERDRHKEDRDRYADHHRYRDREAEHDDEWERGRSSKPHSKSRLSQEEEHHSRPRDADYGKRRRLTSE* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2726 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 297 IPR000504 GO:0003723
Gso8g2726 693 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 692 IPR034772 -
Gso8g2726 693 MobiDBLite consensus disorder prediction 320 397 - -
Gso8g2726 693 CDD RRM_CFIm68_CFIm59 228 301 - -
Gso8g2726 693 MobiDBLite consensus disorder prediction 496 693 - -
Gso8g2726 693 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 692 - -
Gso8g2726 693 MobiDBLite consensus disorder prediction 109 190 - -
Gso8g2726 693 MobiDBLite consensus disorder prediction 533 693 - -
Gso8g2726 693 Gene3D - 217 311 IPR012677 -
Gso8g2726 693 SUPERFAMILY RNA-binding domain, RBD 224 311 IPR035979 GO:0003676
Gso8g2726 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 304 IPR000504 GO:0003723
Gso8g2726 693 SMART rrm1_1 227 300 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2726 Gso-Chr8 44959695 44965857 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2726 K14398 - gmx:100813702 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0657 18 7275141 7279751 Gso8g2726 8 44959695 44965857 GST