Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2725 ATGGACGAGGCCGAGGGAGGCTACGGTGAGAGCGGCGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCCGTCGCCGACGACGGTTTCTTGGGCGAGGAAGAAGACGACGATTACGAGGATCTTTACAACGACGTCAACGTCGGCGAAGGGTTTCTTCAATCGTTGCGCAAGAACGACGATTCGGGGTTTCGAAACGACGACGTCGAGGAAAAGAAGCCTCCGCCGCCGCCGCCGGCGGTTCCGGATGCCGCTGGGGTCTCGATACCGGGTGTCGGTGGCGGTGGAGAGGGTGTCGGTGGTGGTGGAAGCGGGGTTGTGGAATCTAGGGTTTCTGGGAGGGTTGATGGGTTTCAGAATCAAGGGTTTAGAGGGAACGATGTGGGTTCCAAAGGTGGGATTAGGGTTGAATTAGGGAACCAATCTGGGAAACTGACTGAAATTGAGGATCAGGGTGGGAATGATGGTGCTGCAGTGCAGGGGATTGGGCAGCAACCACCTGGTGTGGTTGTTGGGAGTGTGGGAAATGAGGGTTTGGTGAGACAATGTCAAGGTGGTGGTGGTGGTAGTGGAGGAGGAGGGAATGTTATTAGGGTTGGTGGAAATGGTGTTGGGAACAGTGTGAGTGCTGTTAGTGGTGTTAATACTGGAGGAGTTGGAGGTGGTGGTGGTGGTGGTGCTGCTGGTGGTTCTGGTGGTACTATATTGTTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTTGAAACTGAGCTTAGTAAGTATGGGCCTGTTAAGGAGGTGAAGTTTTTCGATGAGAAGGCGAGTGGGAAGTCGAAGGGGTATTGTCAGGTTGAGTTTTTTGACCCTTCTGCTGCCACTGCTTGTAAGGAAGGGATGAATGGGCATGTTTTTAATGGGAGGCCGTGTGTTGTTGCGTTTGCATCGCCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAATAGGAATCAGCAGATGAACCCTTCTGCTGTTCCTCAGGGAAGGAGGGGGCCTGCTGATGCAGGGGCTAAGCCTGGCGGGAGTAATATTTCGACAGTTGGTAATTACCAAGGTGGAGAAGGGAATAGAGGTTATGGAAGAGGAGGAGGTAACTGGGGGAGAGGGAACAATCCTGGTATGGGGAATAGAGGGCCTGTTAATCCAATGAGGAATAGAGGTGGTGGGATGGGTGGTAGAGGTATAATGGGCCATGGTGGAAACGGATTTGGACAGGGTATGGGTGGTACCCCTCCAATGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGTGGCTATGGAGGCTTTCCCGGTGCTCCGACGCCTCCATTTTCTGGGATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCAGCCTTTTTCGGAAGAGGGATGCCTGTTAATGGTATGGGGATGATGCCCGGATCAGGCATGGATGGTCCTAATATGGGAATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCCAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAGGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGCTCGGAAAGAGACTGGTCTGGTACTTCTGAGAGAAGGTACAGAGATGATAGAGATCAAGGATATGAAAGAGATGCACCTAAAGAAAAAGACATGGGCCATGACCATGAATGGTCTGAAAGAAGGCATCGTGATGATAGAGAAACGGGCCGAGAACGATCTCGTGATCGTGACCGTGAACGATCTCGAGACCGTGATCGTGACCGCGAAAGGGATCACCGTGAGCGTGACAGGCACAGAGAAGATAGGGACAAGTATGCAGATCATCATAGGTACAGAGACCGGGAGGCAGAGCATGATGATGAGTGGGAGAGGGGACGATCATCAAGGATGCACAGCAAGTCACGATTATCACAAGAGGAAGAACACCATTCTAGGCCAAGAGATGCTGATTATGGGAAGAGGCGGAGGCTTACCTCTGAATAA 2112 0.5185 MDEAEGGYGESGDPMDQFHRNEAISAVADDGFLGEEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNDDVEEKKPPPPPPAVPDAAGVSIPGVGGGGEGVGGGGSGVVESRVSGRVDGFQNQGFRGNDVGSKGGIRVELGNQSGKLTEIEDQGGNDGAAVQGIGQQPPGVVVGSVGNEGLVRQCQGGGGGSGGGGNVIRVGGNGVGNSVSAVSGVNTGGVGGGGGGGAAGGSGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATACKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVPQGRRGPADAGAKPGGSNISTVGNYQGGEGNRGYGRGGGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGMGGTPPMLHPQSMMNQGFDPAFGGPMGRMGGYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPGSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGTSERRYRDDRDQGYERDAPKEKDMGHDHEWSERRHRDDRETGRERSRDRDRERSRDRDRDRERDHRERDRHREDRDKYADHHRYRDREAEHDDEWERGRSSRMHSKSRLSQEEEHHSRPRDADYGKRRRLTSE* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2725 703 MobiDBLite consensus disorder prediction 330 366 - -
Gso8g2725 703 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 702 - -
Gso8g2725 703 CDD RRM_CFIm68_CFIm59 238 311 - -
Gso8g2725 703 MobiDBLite consensus disorder prediction 505 703 - -
Gso8g2725 703 MobiDBLite consensus disorder prediction 543 703 - -
Gso8g2725 703 SUPERFAMILY RNA-binding domain, RBD 234 322 IPR035979 GO:0003676
Gso8g2725 703 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 307 IPR000504 GO:0003723
Gso8g2725 703 Gene3D - 229 352 IPR012677 -
Gso8g2725 703 MobiDBLite consensus disorder prediction 1 110 - -
Gso8g2725 703 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Gso8g2725 703 MobiDBLite consensus disorder prediction 31 46 - -
Gso8g2725 703 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 702 IPR034772 -
Gso8g2725 703 SMART rrm1_1 237 310 IPR000504 GO:0003723
Gso8g2725 703 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2725 Gso-Chr8 44945389 44951177 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2725 K14398 - gmx:100782869 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2725 8 44945389 44951177 Gso8g2725 8 44945389 44951177 ECH
Gso18g0658 18 7295229 7300137 Gso8g2725 8 44945389 44951177 GST