Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2724 ATGGCGGACTCCGACAACGACTCCGGCGGCGCGCACAACGGCGGCAAGGGGAGCGAGATGTCACCGCGGGAGCAGGACCGGTTTCTCCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCAGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACGATCAACGGCGACGACCTGCTCTGGGCGATGACCACTCTGGGCTTCGAGGACTACGTGGAGCCTCTCAAAGGCTACCTCCAGCGCTTCCGAGAAATGGAAGGAGAGAAGACCGTGGCGGCGCGTGACAAGGACGCGCCTCCTCTTACGAATGCTACCAACAGTGCCTACGAGAGTGCTAATTATGCTGCTGTTCCTGGTGGAATCATGATGCATCAGGGACACGTGTACGGTTCTGCCGGCTTCCATCAAGTGGCTGGCGGGGCTATAAAGGGTGGGCCTGCTTATCCTGGGCCTGGATCCAATGCCGGTAGGCCCAGATAA 567 0.6067 MADSDNDSGGAHNGGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKTVAARDKDAPPLTNATNSAYESANYAAVPGGIMMHQGHVYGSAGFHQVAGGAIKGGPAYPGPGSNAGRPR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2724 188 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Gso8g2724 188 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Gso8g2724 188 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Gso8g2724 188 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso8g2724 188 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 156 - -
Gso8g2724 188 MobiDBLite consensus disorder prediction 1 27 - -
Gso8g2724 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Gso8g2724 188 SUPERFAMILY Histone-fold 25 132 IPR009072 GO:0046982
Gso8g2724 188 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso8g2724 188 Gene3D Histone, subunit A 16 145 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2724 Gso-Chr8 44941530 44943357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2724 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.698 8.22e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso8g2724 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2724 K08065 - gmx:100813169 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2724 8 44941530 44943357 Gso8g2724 8 44941530 44943357 ECH