Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2697 ATGGATATTTCGGAGTACACAAGGATTGTTTTTGACAAACTTCATAGATTTGAGCCTGAGAATGCTACAAAGATCATCGGGTATCTCCTTCTCCAAGACCATGGTGAGCAAGACATGGTGAAATTGGCTTCACTGCCAGACCATTTAATTCGCGACGTGGCGTACAAGGCAAGAACCGAGCTTCAAAGGTTGGCTTCTAGATCAGCCATTCAGCCAATTTCACTTCCCACCAACTCTCAACAATGTTTAAGCCATTTGTCAGTAATCTCCCCTACTTCGGTAATCACCCCTGGCACTCTTACTTCACCAGCAAGCTTCCAGGTTCAATCTCCCTATTGGGATCCTCAGTCTGCTAGCAATACTAATGCAGAATTCATGGCACTAGGTTATGTGGATTCTATCTCAGAACTTCAAAAGCAGACACCTTTGTTCAGTTTAGAGAATCATATGGATACTATGAACTCCGGAACTGCTGGGATTGCTAATGATTACTATGGCTTAGATGCTTCATCAGCTAGTAATTTGGGTGGAAAAAATGGAAGGTTTGAATTTCCAGTCAAGACCTGTCACTATTTCAACAAAGGGTTTTGTAAGCATGGAAATAGCTGTAGATATTATCACGAACAAGGCGCCCCAGATATGTTCTCTCACATGTACAAAAAAGTGCTGCAGGCAGACGGCTACCTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGCAGGCCTCATGGGCAGCATTCAGTTGTTCTGGCAGAAGATGCTCCAAAGTTCAATGGAAAGGTAGATTATGGTAAATACATTAGCGCATCGCGACAGATATACCTGACATTTCCAGCTGACAGCACTTTTAGCGAGGGTGATGTTTCAAACTACTTTAGTACTTTTGGGAAAGTTGAAGATGTAAGGATTCCGAGCCAAGAGAGAAGGATGTTTGGATTTGTAACATTTGATGATCCTGAAACTGTTAAAGTAATTTTGGATAAGGGAAATCCCCATTATGTTTGTGAATCCCGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAACTTATGCTCAGGAAGAACTCTGATAGGATCGAGCATTCTGCTTATTATTCACCACACTATGTAGACATTGACACTGAACCTACCTCAATTCCAAGAAGTTGTAGGAAACCTCGATTTCTGAGGAGGCAGCTCATTAACCAGCAAGAGGAGGCAGCACTTGAATTTCAGAGACAACGTTTTGCAGAGCTGCAACTGGCCCAAAAATCATTGTCCACTTCACCCCATTTAGGCTTCAACATGGACGGGTTAAAAGTTTCGGATGTCTCTTGCATCTTTCATGCAGAACATTTCAATGTCCAGTCTGCAGAACCTCACAGTCATGCTCCGAATGACATAGCTGGATATACAGATAACAATTACACTGATGAGGACAGCAATCAAGGTCTGAACCTCCCAGACAGCCCCTTTGCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATGTAG 1548 0.427 MDISEYTRIVFDKLHRFEPENATKIIGYLLLQDHGEQDMVKLASLPDHLIRDVAYKARTELQRLASRSAIQPISLPTNSQQCLSHLSVISPTSVITPGTLTSPASFQVQSPYWDPQSASNTNAEFMALGYVDSISELQKQTPLFSLENHMDTMNSGTAGIANDYYGLDASSASNLGGKNGRFEFPVKTCHYFNKGFCKHGNSCRYYHEQGAPDMFSHMYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDSRPHGQHSVVLAEDAPKFNGKVDYGKYISASRQIYLTFPADSTFSEGDVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKVILDKGNPHYVCESRVLVKPYKEKPKLMLRKNSDRIEHSAYYSPHYVDIDTEPTSIPRSCRKPRFLRRQLINQQEEAALEFQRQRFAELQLAQKSLSTSPHLGFNMDGLKVSDVSCIFHAEHFNVQSAEPHSHAPNDIAGYTDNNYTDEDSNQGLNLPDSPFAFPVDSGISAVM* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2697 515 Gene3D - 293 367 IPR012677 -
Gso8g2697 515 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 219 515 - -
Gso8g2697 515 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 218 - -
Gso8g2697 515 SMART rrm1_1 290 360 IPR000504 GO:0003723
Gso8g2697 515 ProSiteProfiles Zinc finger C3H1-type profile. 183 210 IPR000571 GO:0046872
Gso8g2697 515 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 218 - -
Gso8g2697 515 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 219 515 - -
Gso8g2697 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 348 IPR000504 GO:0003723
Gso8g2697 515 MobiDBLite consensus disorder prediction 479 499 - -
Gso8g2697 515 Coils Coil 413 433 - -
Gso8g2697 515 SUPERFAMILY RNA-binding domain, RBD 300 381 IPR035979 GO:0003676
Gso8g2697 515 SUPERFAMILY CCCH zinc finger 185 208 IPR036855 GO:0046872
Gso8g2697 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Gso8g2697 515 CDD RRM_AtC3H46_like 291 360 IPR034365 -
Gso8g2697 515 MobiDBLite consensus disorder prediction 469 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2697 Gso-Chr8 44640801 44645783 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2697 - - gmx:100806206 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2697 8 44640801 44645783 Gso8g2697 8 44640801 44645783 ECH
Gso18g0685 18 7771747 7776376 Gso8g2697 8 44640801 44645783 GST
Gso8g2697 8 44640801 44645783 Gso14g0133 14 1180512 1186847 PCT
Gso8g2697 8 44640801 44645783 Gso2g2531 2 49681408 49687885 PCT
Gso14g0133 14 1180512 1186847 Gso8g2697 8 44640801 44645783 PCT
Gso2g2531 2 49681408 49687885 Gso8g2697 8 44640801 44645783 PCT