Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2656 ATGTGGTTGGATTTGGTGGTGGCAATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTGGAACTTCAATTGCAAGAACAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACCGACCCTGAACTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATAACACTAATATTTTTACTGAAGAGAAAGTGGATCCCCTTGATCCCACTTATGTTGAACCAGAGCCATTGGAGGACAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGTTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCAAGTCCTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGACGACGGAAGTTCTGTGAAACTTGGGGCAGAAGAAATGGCACTGTCTGAGCATGCAGAAATGAGTGACATAGAGAGTGATTCCAGCTTAGATCAATCCGATTCCAGTGACTATGAGGAGGAGGAGGAATCGCAAGGCATAGGATTTCTGGAGAGTACCAATCTACAGAGAGGTATTCAAACTGAAACTGCGACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATAGCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCATGCACTCGAGTCTCATAAAAGGGAAGAGAACAAAGAGAAGCAAGGCAAGAAGAAACAGAGCCGAGGTGGCAAGAGAAAACGTGAGAAGAAATTTGCAGAAGCAAACCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAATGAGGCTTTTGGCGGTGGATTGATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAGAAGGTGGATAGACGAGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATTAGGGTTGAAAAGCTCGAGCACATTGTCAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG 1512 0.4451 MWLDLVVAMGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTDPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTNIFTEEKVDPLDPTYVEPEPLEDKCYSVGSKCRFRHKDGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELKSWDEKAGVGQVVFRDDGSSVKLGAEEMALSEHAEMSDIESDSSLDQSDSSDYEEEEESQGIGFLESTNLQRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIAVKVLPPKQSLDHALESHKREENKEKQGKKKQSRGGKRKREKKFAEANRAAKEEEESASDVFALINNHLAMHNEAFGGGLMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKIRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2656 503 Coils Coil 463 483 - -
Gso8g2656 503 ProSiteProfiles G-patch domain profile. 302 348 IPR000467 GO:0003676
Gso8g2656 503 MobiDBLite consensus disorder prediction 246 280 - -
Gso8g2656 503 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
Gso8g2656 503 SUPERFAMILY CCCH zinc finger 149 173 IPR036855 GO:0046872
Gso8g2656 503 Coils Coil 52 72 - -
Gso8g2656 503 Pfam G-patch domain 302 344 IPR000467 GO:0003676
Gso8g2656 503 SMART c3hfinal6 148 174 IPR000571 GO:0046872
Gso8g2656 503 MobiDBLite consensus disorder prediction 259 275 - -
Gso8g2656 503 MobiDBLite consensus disorder prediction 348 389 - -
Gso8g2656 503 MobiDBLite consensus disorder prediction 371 389 - -
Gso8g2656 503 SMART G-patch_5 300 346 IPR000467 GO:0003676
Gso8g2656 503 MobiDBLite consensus disorder prediction 483 503 - -
Gso8g2656 503 Coils Coil 369 389 - -
Gso8g2656 503 Coils Coil 432 459 - -
Gso8g2656 503 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 9 503 - -
Gso8g2656 503 Pfam CCCH-type zinc finger 153 173 IPR041367 -
Gso8g2656 503 Gene3D - 124 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2656 Gso-Chr8 44219729 44226109 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso8g2656 G-patch 5.1e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2656 - - gmx:100796284 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0748 18 8994748 9000735 Gso8g2656 8 44219729 44226109 GST