Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2654 ATGGGTAGGGGTGGAACCGCCGCGGCGGCGGCGGAGGTCGCCGAACCCGGTTTAAGGCCGGTTTATTTCAAAGAACAGCGATATAGGGGCGTCAGAAAAAGACCGTGGGGCCGGTTCGCTGCCGAAATCAGAGACCCTTTGAAGAAAGCCAGGGTTTGGCTCGGAACCTTTGACACCGCCGAGGAGGCGGCGCGTGCCTACGACACGGCGGCGAGAACCCTCCGGGGACCAAAGGCGAAGACCAATTTCCCTCTTTCTCCGCCGTTCTACCATCCCGATCCATTTTCCGATCACCGGCACTTCGCCAACACCGGCGAAGATTTCCACGATCACCGGCGACCAACATCCAGTGGCATGAGCAGCACCGTAGAGTCCTTCAGCGGCCCCCGTGCTGCCGTGCCGGCGACAGCGCCGGTGGCCACCGGCCGGAGATATCCCCGGACGCCACCCGTTATCCCCGAGGACTGCCGCAGCGACTGCGATTCGTCGTCCTCCGTCGTTGACGACGGCGAAGGCGACAACGTGGCGTCGTCGTTCCCGCGAGAACCGTTGCCGTTTGATCTAAACGCGTTGCCGTTAGACGATGCTGACGTGGCAACCGATGATCTGTTCTGCACCGTTCTTTGCCTCTGA 633 0.6193 MGRGGTAAAAAEVAEPGLRPVYFKEQRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARTLRGPKAKTNFPLSPPFYHPDPFSDHRHFANTGEDFHDHRRPTSSGMSSTVESFSGPRAAVPATAPVATGRRYPRTPPVIPEDCRSDCDSSSSVVDDGEGDNVASSFPREPLPFDLNALPLDDADVATDDLFCTVLCL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2654 210 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gso8g2654 210 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Gso8g2654 210 MobiDBLite consensus disorder prediction 103 173 - -
Gso8g2654 210 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Gso8g2654 210 PANTHER ETHYLENE RESPONSE FACTOR 1 192 - -
Gso8g2654 210 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Gso8g2654 210 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Gso8g2654 210 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Gso8g2654 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 192 - -
Gso8g2654 210 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gso8g2654 210 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2654 Gso-Chr8 44201279 44202616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2654 2 210 AP2-EREBP Transcription Factor Family AT1G50640 58.150 2.34e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g2654 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2654 K09286 - gmx:100795762 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2654 8 44201279 44202616 Gso8g2654 8 44201279 44202616 ECH
Gso18g0752 18 9100391 9101678 Gso8g2654 8 44201279 44202616 GST
Gso8g2654 8 44201279 44202616 Gso14g0168 14 1482932 1484428 PCT
Gso8g2654 8 44201279 44202616 Gso2g2497 2 49404707 49406157 PCT
Gso14g0168 14 1482932 1484428 Gso8g2654 8 44201279 44202616 PCT
Gso2g2497 2 49404707 49406157 Gso8g2654 8 44201279 44202616 PCT