Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2626 ATGCGTAAACCCATCTTCACGTTCTTCATACATATCTTTCTTGTTTGCTTCCCAAGTCTCTCGAAGCATCTTTCTTTCTCTTCCTGCAGAAGCTATCCGTGTTACTTGTTCCCAAGTCTCCAACAAGCAAAGTACATGGTTGATTTGGAAATCCAGGTCCCCAGCGCATTCGACCCGTTTGCCGAGGCGAGAGAATCAGATGCCCCCGGGGCAAAGGAGTATGTGCACATACGAATTCAGCAGAGGAATGGAAAGAAGAGTCTGACAACAGTGCAAGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAGGACCTCAAGAAGGACTTCTGCTGCAACGGGACTGTGGTGCAGGACAAGGAGCTTGGCAAGATTATCCAACTCCAAGGCGACCAGCGCAAGAACGTATCCCATTTCCTCGTTCAGGCCGGTCTTGTCCGGAAGGACCAGGTCAAGATTCATGGTTTTTGA 474 0.4937 MRKPIFTFFIHIFLVCFPSLSKHLSFSSCRSYPCYLFPSLQQAKYMVDLEIQVPSAFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKDFCCNGTVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQVKIHGF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2626 157 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 50 157 IPR005874 GO:0003743
Gso8g2626 157 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 46 157 - -
Gso8g2626 157 Pfam Translation initiation factor SUI1 72 145 IPR001950 GO:0003743|GO:0006413
Gso8g2626 157 ProSiteProfiles Translation initiation factor SUI1 family profile. 75 145 IPR001950 GO:0003743|GO:0006413
Gso8g2626 157 CDD eIF1_SUI1 73 156 IPR005874 GO:0003743
Gso8g2626 157 Gene3D - 39 157 - -
Gso8g2626 157 SUPERFAMILY eIF1-like 44 157 IPR036877 GO:0003743|GO:0006413
Gso8g2626 157 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 46 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2626 Gso-Chr8 43914284 43916012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2626 46 157 Eukaryotic Initiation Factors Gene Family AT5G54940 83.929 3.17e-69 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2626 K03113 - gmx:100787664 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2626 8 43914284 43916012 Gso8g2626 8 43914284 43916012 ECH
Gso18g0792 18 9775048 9776499 Gso8g2626 8 43914284 43916012 GST
Gso8g2626 8 43914284 43916012 Gso14g0195 14 1709302 1710466 PCT
Gso8g2626 8 43914284 43916012 Gso2g2474 2 49227364 49228447 PCT
Gso14g0195 14 1709302 1710466 Gso8g2626 8 43914284 43916012 PCT
Gso2g2474 2 49227364 49228447 Gso8g2626 8 43914284 43916012 PCT