Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2625 ATGGGTTGTTGTGCAAGTAAAGAGTCAGAGCCGCAACACAATGGTTACAGACATGCTGGGACTGGTGGTGTGCACAACCAGAAGACTCATGAACCTTTGGTCAACCAATCAAGAGCACCTGCAAATCAACCTTATCATTTACATGAAAAGCATGCTGCATCCACTGCTCAGACAGTGCCTCAAAATATGCCATGGAAGCCTCCTGGTCCAGCCCTTAGTCCTAAACCTGTTGTTGGTGTTAGGCAAGACACAATTCTTGGGAAGCAGTTTGAGGATGTGAAGCAGTTCTACACACTTGGGAAGGAGTTGGGTAGAGGGCAATTTGGTGTGACATATCTTTGCACTGAGAATTCGACCGGATTGCAGTATGCCTGCAAGTCCATTTCCAAGAGGAAACTTGCGAGCAAATCTGATAAGGAGGACATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCCAACATTGTTGAGTTCAAAGGGGCTTATGAGGATAGGAGCTCAGTTCATGTTGTGATGGAGCTGTGTGCAGGTGGGGAACTTTTTGATAGGATTATTGCCAAGGGGCATTACAGTGAGAAGGCTGCTGCTTCAATTTGCAGACAAATTGTAAATGTTGTTCATATCTGTCATTTCATGGGTGTGATGCATAGGGATCTGAAACCAGAGAATTTTTTGCTATCTAGTAGGGACGAAAATGCACTTCTCAAGGCAACCGATTTTGGCTTGTCAGTTTTCATTGAAGAAGGAAAGGTATATCGGGATATAGTTGGTAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTTAGTGGAGTCCCTCCATTTTGGGCTGAGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCTAACATCTCAGACAGTGCCAAGGATCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACCTCTGCTCAAGTTCTTGAGCACCCATGGATTAAAGATGGAAATGCTTCAGACAAGCCGATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTTAGAGCAATGAATAAGCTAAAGAAACTTGCCTTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACAATCACCTATGAAGAACTTAAGTCAGGATTGCATAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAACTTATGGAAGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAATTAGAAAGAGATGACCAACTTTTCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAATTGGAATCAGCCATGAAAGAATATGGTATGGGTGATGATGCAACAATCAAGGAAATCATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATCATGATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGGAACCAACAACAAGGCAAGCTATTCTAA 1656 0.4191 MGCCASKESEPQHNGYRHAGTGGVHNQKTHEPLVNQSRAPANQPYHLHEKHAASTAQTVPQNMPWKPPGPALSPKPVVGVRQDTILGKQFEDVKQFYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLASKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRSSVHVVMELCAGGELFDRIIAKGHYSEKAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPNISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKSGLHRLGSKLTEAEVKQLMEAADVDGNGSIDYIEFITATMHRHKLERDDQLFKAFQYFDKDNSGFITRDELESAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFSAMMKSGNQQQGKLF* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2625 551 SUPERFAMILY Protein kinase-like (PK-like) 96 375 IPR011009 -
Gso8g2625 551 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2625 551 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2625 551 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
Gso8g2625 551 CDD STKc_CAMK 96 354 - -
Gso8g2625 551 ProSiteProfiles EF-hand calcium-binding domain profile. 511 546 IPR002048 GO:0005509
Gso8g2625 551 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Gso8g2625 551 CDD EFh 402 461 IPR002048 GO:0005509
Gso8g2625 551 MobiDBLite consensus disorder prediction 51 74 - -
Gso8g2625 551 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Gso8g2625 551 Pfam EF-hand domain pair 472 541 IPR002048 GO:0005509
Gso8g2625 551 Gene3D - 363 547 - -
Gso8g2625 551 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Gso8g2625 551 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2625 551 SUPERFAMILY EF-hand 378 542 IPR011992 -
Gso8g2625 551 MobiDBLite consensus disorder prediction 1 28 - -
Gso8g2625 551 PANTHER SERINE/THREONINE-PROTEIN KINASE 55 545 - -
Gso8g2625 551 CDD EFh 473 541 IPR002048 GO:0005509
Gso8g2625 551 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Gso8g2625 551 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 55 545 - -
Gso8g2625 551 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Gso8g2625 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Gso8g2625 551 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Gso8g2625 551 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Gso8g2625 551 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Gso8g2625 551 Gene3D Transferase(Phosphotransferase) domain 1 183 362 - -
Gso8g2625 551 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Gso8g2625 551 SMART efh_1 473 501 IPR002048 GO:0005509
Gso8g2625 551 SMART efh_1 437 465 IPR002048 GO:0005509
Gso8g2625 551 SMART efh_1 401 429 IPR002048 GO:0005509
Gso8g2625 551 SMART efh_1 515 543 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2625 Gso-Chr8 43905028 43910636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2625 1 551 EF-hand Containing Proteins AT3G20410 73.393 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso8g2625 Pkinase 1.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2625 K13412 - gmx:547888 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2625 8 43905028 43910636 Gso8g2625 8 43905028 43910636 ECH
Gso18g0794 18 9788324 9794421 Gso8g2625 8 43905028 43910636 GST