Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2624 ATGACCAAGTGGTTTTCTGGGATAATGGGCGCAACAACATGGTGTAAGGAAGTTTTTTCTTTGAGGGTTTTAGCTGGCAGTGTCGGTTATGCAGTTGATCTTTTCATAAAAGTTGTTATTGCTGAATTTACTTGCATTCTGGCACTAGGAGGGTCCATAATGGGGATAATTGCAGGAGCTATCAAAGGCCATACAAGAGGAGCTGGTTTTCTTGATGGAGCTTGCAAAGGAGCTGTCACAGGGGCCATTGCAGCACTAGAATTGCCAAACATTGCTGCTTGTGATGAGCCACTTTCTAAGGTTGCCCTGTTGAGAAGTTTATTAAATGGAAAGATATTTGTGGAATGGATATGTCCAGCTGTTGCACAAGCCTATCAATGTCATATCAGTGCACATGCAACATCTTACGGAGAAGAATCAGATATTTACAATGACGATATTGTCAGGGGAATCACAGTCAAAGGGATGGCTTGGAATATCATTCAAAAGCTTCCTGTTCAACAATTTAATTCCAGTAAAATGTTCAAATTATACAACGACTCATGCTGCTCAATTTGCTTCCAGGATTTTGAGTATGAGGAATTTGTGAGGACACTTCCCAAATGTGGCCACTTTTTTCACTCAGTCTGCATAGACAAATGGCTAGTCCAACAAGGATCATGCCCCATGTGTAGAATTTTTGTTTCAGATTTATGA 696 0.4066 MTKWFSGIMGATTWCKEVFSLRVLAGSVGYAVDLFIKVVIAEFTCILALGGSIMGIIAGAIKGHTRGAGFLDGACKGAVTGAIAALELPNIAACDEPLSKVALLRSLLNGKIFVEWICPAVAQAYQCHISAHATSYGEESDIYNDDIVRGITVKGMAWNIIQKLPVQQFNSSKMFKLYNDSCCSICFQDFEYEEFVRTLPKCGHFFHSVCIDKWLVQQGSCPMCRIFVSDL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2624 231 CDD RING-H2_PA-TM-RING 182 225 - -
Gso8g2624 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 228 - -
Gso8g2624 231 Pfam Ring finger domain 183 225 IPR001841 -
Gso8g2624 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 229 IPR013083 -
Gso8g2624 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 8 228 IPR044523 -
Gso8g2624 231 SUPERFAMILY RING/U-box 175 228 - -
Gso8g2624 231 ProSiteProfiles Zinc finger RING-type profile. 183 225 IPR001841 -
Gso8g2624 231 SMART ring_2 183 224 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2624 Gso-Chr8 43892660 43894879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2624 21 225 C3H Transcription Factor Family AT5G66070 33.953 5.01e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2624 - - gmx:100797332 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2624 8 43892660 43894879 Gso8g2624 8 43892660 43894879 ECH
Gso18g0795 18 9827805 9829971 Gso8g2624 8 43892660 43894879 GST