Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2596 ATGAAATCGTTGAAATTGCAGCAGCAGCAGCAACGACTACTATACTACCAGAAAAAGAAGAACCCTTCTAAAAACCTGCGGCAAAAAGAACCAACAATGTCGCCGAGCTTCGTCTTCGACCCTCCTAGCGACGAAGAAATCGAACACTCCGAACACGAAGAAGAAGAAGAAGAAGAATCAGTAGGAGAACCAGAGTCAGGATCAGAATCAGAGTCAGAAGGAGAAGGAGGAGAAGTAGAAGAAGGGCATAAAGAAGCGCGGGTTCCGAAGAAGAAGAAGAAGAAAACACAGTCTCCATGGGACTTCGCCAAATACACGGAATCAGTGGCCGAGGAACACGCTCGCAGGAGCACAACCTCGGTCGACGAGAAAATCTCAAAAGCACTCAAACAACGTTCCACGCCTCTCGTTGCTGAGCTCGACCACAGCTCCGAGTCCGAACCTGATGAACAAGAAGATTATAGACCGGAGGAAGAAGATGAAGAAGAGGGTAATGATGGTGACATCAAATCCTTTTTTGCTCCTTCTGGTGGAACCTCTTTCCATGCCGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATTCTAAACCAACACCAATTCAGGCAGCTTGTATTCCATTGGCATTGAGTGGTCGTGATATATGTGGTAGTGCCATTACCGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTATTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACTATGTTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGATCCATCTACAAAACGGCCAGCAACCTTGACTGAGGAGGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACAGATGTGGCTGCCCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTGCAAAGAGGGCAGGTTCAAAGCTGAAAAGCCGTATTGTTGCTGAGCAATCTATACATAAGTGGTCTCATATAATTGAGCAAATGGAAGACCAAATTTCTGAAGTACTTCATGAAGAGAGAGAAGAAAGAGTTCTAAGAAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCATCCAAGGCATCCATGGATAAGTGCAAGAGTTCTGGGAAAGAGGTTATTAGTGCTGAACAAGCTGAAGACCTCAGAATGAAGGAGAAGAGGAAGCGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGTAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGAGGAGGAGGATGACAAACAAGTAGAGACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCCTTAGATTCTGGCAAGATTGTGGAGAAGAATAAAAAGAAATCTAATAATAATTCCCGAAAAACTCCTTCAAGGACAGAAGAGATGCGGGAGTTATTCCAGACTGACATGAAGGATAAAAAGTCAAAAAGAAGAGGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2370 0.4481 MKSLKLQQQQQRLLYYQKKKNPSKNLRQKEPTMSPSFVFDPPSDEEIEHSEHEEEEEEESVGEPESGSESESEGEGGEVEEGHKEARVPKKKKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLVAELDHSSESEPDEQEDYRPEEEDEEEGNDGDIKSFFAPSGGTSFHADSFLQLNLSRPLLRACEALGYSKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIHKWSHIIEQMEDQISEVLHEEREERVLRKAEMEATKAENMIAHREEIFSRPKRTWFVTEKEKKLAAKASKASMDKCKSSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEEEEDDKQVETKGGNKKEKGGMSLVDLAYRRAKAVKAVKKALDSGKIVEKNKKKSNNNSRKTPSRTEEMRELFQTDMKDKKSKRRGVGGGKKSKSSFKSKSRYKRK* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2596 789 Pfam Helicase conserved C-terminal domain 421 524 IPR001650 -
Gso8g2596 789 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 184 212 IPR014014 GO:0003724
Gso8g2596 789 Coils Coil 673 693 - -
Gso8g2596 789 MobiDBLite consensus disorder prediction 721 789 - -
Gso8g2596 789 MobiDBLite consensus disorder prediction 1 18 - -
Gso8g2596 789 CDD SF2_C_DEAD 401 533 - -
Gso8g2596 789 Gene3D - 405 652 IPR027417 -
Gso8g2596 789 MobiDBLite consensus disorder prediction 47 76 - -
Gso8g2596 789 MobiDBLite consensus disorder prediction 1 174 - -
Gso8g2596 789 MobiDBLite consensus disorder prediction 95 129 - -
Gso8g2596 789 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 563 IPR001650 -
Gso8g2596 789 CDD DEADc_DDX27 195 390 - -
Gso8g2596 789 MobiDBLite consensus disorder prediction 634 660 - -
Gso8g2596 789 MobiDBLite consensus disorder prediction 145 166 - -
Gso8g2596 789 MobiDBLite consensus disorder prediction 767 789 - -
Gso8g2596 789 PANTHER BNAA01G17110D PROTEIN 89 315 - -
Gso8g2596 789 PANTHER BNAA01G17110D PROTEIN 340 767 - -
Gso8g2596 789 Pfam DEAD/DEAH box helicase 208 378 IPR011545 GO:0003676|GO:0005524
Gso8g2596 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 544 IPR027417 -
Gso8g2596 789 SMART ultradead3 203 404 IPR014001 -
Gso8g2596 789 Coils Coil 582 602 - -
Gso8g2596 789 MobiDBLite consensus disorder prediction 634 707 - -
Gso8g2596 789 SMART helicmild6 439 524 IPR001650 -
Gso8g2596 789 PANTHER RNA HELICASE 89 315 - -
Gso8g2596 789 PANTHER RNA HELICASE 340 767 - -
Gso8g2596 789 Gene3D - 144 391 IPR027417 -
Gso8g2596 789 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 389 IPR014001 -
Gso8g2596 789 MobiDBLite consensus disorder prediction 721 766 - -
Gso8g2596 789 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 335 343 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2596 Gso-Chr8 43572599 43580842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2596 184 541 Eukaryotic Initiation Factors Gene Family AT3G13920 33.795 1.95e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2596 K13181 - gmx:100791233 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0826 18 10660733 10669868 Gso8g2596 8 43572599 43580842 GST