Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2579 ATGGAAACTGAAAAGTCTAATGTTTCAAAGGCTGAAGAATTTAAACTCCTTGCCAATGAAGCATTCAATGCTCGAAAATTCTCCCAAGCCATTGATCTATATACACAAGCAATTGAGCTGAACAGTCAAAATGCAGTTTACTTTTCTAATCGTGCCTTTGCCCATCTTCGGCTTGAGGAATATGGTAGCGCAATACAAGATGCCACAAAGGCTATTGAAATTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTCATCTTGGGCTGGGGAAATTCAAGGAAGCTCTGAAAGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTAATGAAACTTAAATTTGAAGAAGCGATTGCTGCACCAGAGTCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCGAACAATAGGAAAGGGCCGCAATTCTTCGGTGTCAACCGAAGTGGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGCGGCGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAGTTGCAATTGTGGTTGGTTTGCTGTTGCTCCTTGGGGCTTATTGGTGGAGTGGCCACAATACTGATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGCTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAATCAGAAATTCTTACATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAGTACTATGATCTTCTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATTTAGCCAGAGGAAATCATGAGAGTAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCGAAGTTGAATGAAACATTTGTCGAACTATTTGCAGAAGTATTCTGCTGTTTGCCTTTGGCTCATGTGATAAATGAGAAAGTTTTCGTAGTTCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGACATCCGATCAATTAATAGATTTTGTGAGCCTCCTGAAGAAGGGTTGATGTGTGAATTGCTATGGAGCGATCCACAACCTCTCCCTGGAAGGGGCCCAAGTAAGCGTGGTGTAGGCCTTTCTTTTGGTGCAGATGTTACAAAAAGGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGAGATCTCACGAAGTAAAGGATGAGGGTTATGAGATTGAACATGAGGGTAAACTCATAACTGTGTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAGGGTGCCTTTATTCGATTTGAAGCGCCTGATTTGAAACCTAACATTGTCACATTTTCAGCGGTGCCACACCCTGATGTCAAACCTATGGCATATGCAAACAACTTCCTCCGGATGTTCTCATAA 1623 0.4073 METEKSNVSKAEEFKLLANEAFNARKFSQAIDLYTQAIELNSQNAVYFSNRAFAHLRLEEYGSAIQDATKAIEIDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAAPESERRSIAESIDFRTIGKGRNSSVSTEVAIAAVTVAVMAAAVMLFRTSKTTIVVAIVVGLLLLLGAYWWSGHNTDVEPQYSGARIEGDAVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREMLQALPSLVDIHVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVRSHEVKDEGYEIEHEGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2579 540 SMART pp2a_7 246 522 IPR006186 GO:0016787
Gso8g2579 540 Pfam Calcineurin-like phosphoesterase 278 472 IPR004843 GO:0016787
Gso8g2579 540 Pfam PPP5 TPR repeat region 211 270 IPR013235 -
Gso8g2579 540 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Gso8g2579 540 Gene3D - 206 539 IPR029052 -
Gso8g2579 540 Pfam Tetratricopeptide repeat 17 78 - -
Gso8g2579 540 SUPERFAMILY Metallo-dependent phosphatases 228 534 IPR029052 -
Gso8g2579 540 PIRSF PPPtase_5 1 540 - -
Gso8g2579 540 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Gso8g2579 540 CDD MPP_PP5_C 218 533 IPR041753 -
Gso8g2579 540 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 210 539 - -
Gso8g2579 540 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 11 188 - -
Gso8g2579 540 Gene3D Tetratricopeptide repeat domain 2 156 IPR011990 GO:0005515
Gso8g2579 540 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Gso8g2579 540 PANTHER BNAC09G39960D PROTEIN 11 188 - -
Gso8g2579 540 PANTHER BNAC09G39960D PROTEIN 210 539 - -
Gso8g2579 540 SMART tpr_5 11 44 IPR019734 GO:0005515
Gso8g2579 540 SMART tpr_5 79 112 IPR019734 GO:0005515
Gso8g2579 540 SMART tpr_5 45 78 IPR019734 GO:0005515
Gso8g2579 540 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Gso8g2579 540 PRINTS Serine/threonine phosphatase family signature 278 305 IPR006186 GO:0016787
Gso8g2579 540 PRINTS Serine/threonine phosphatase family signature 308 335 IPR006186 GO:0016787
Gso8g2579 540 PRINTS Serine/threonine phosphatase family signature 341 365 IPR006186 GO:0016787
Gso8g2579 540 PRINTS Serine/threonine phosphatase family signature 375 401 IPR006186 GO:0016787
Gso8g2579 540 PRINTS Serine/threonine phosphatase family signature 405 432 IPR006186 GO:0016787
Gso8g2579 540 PRINTS Serine/threonine phosphatase family signature 461 481 IPR006186 GO:0016787
Gso8g2579 540 PRINTS Serine/threonine phosphatase family signature 483 499 IPR006186 GO:0016787
Gso8g2579 540 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2579 Gso-Chr8 43316561 43326688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2579 224 462 Calmodulin-binding Proteins AT5G63870 33.099 9.49e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2579 K04460 - gmx:100820099 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2579 8 43316561 43326688 Gso8g2579 8 43316561 43326688 ECH
Gso18g0855 18 11560811 11571510 Gso8g2579 8 43316561 43326688 GST