Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2575 ATGGCTGCAATCTTTGCTTCCAGATGCTCTCGTGTGGGCCGTTCTCTGTTCGGTGGATTAAGCAACAGTTCCCCTGGTTTATTTACCACATTACATGAGATGACATGCAAAAATTTGTTTTCTCAGCAACAACGTACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTGGATAACTCGGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCTGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGGGTAGTGGTGCGTGCGGCAATGCAAAAGGGGCGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAACCTATTGGAACCAGAGTTTTTGGACCAGTGCCTCATGAGCTAAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCACATTGCATAA 501 0.4511 MAAIFASRCSRVGRSLFGGLSNSSPGLFTTLHEMTCKNLFSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2575 166 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1 19 166 - -
Gso8g2575 166 ProSitePatterns Ribosomal protein L14 signature. 104 130 IPR019972 -
Gso8g2575 166 Hamap 50S ribosomal protein L14 [rplN]. 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gso8g2575 166 Pfam Ribosomal protein L14p/L23e 48 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gso8g2575 166 SMART Ribosomal_L14_2 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gso8g2575 166 Gene3D Ribosomal protein L14 47 166 IPR036853 GO:0003735|GO:0005840|GO:0006412
Gso8g2575 166 SUPERFAMILY Ribosomal protein L14 48 165 IPR036853 GO:0003735|GO:0005840|GO:0006412
Gso8g2575 166 TIGRFAM rplN_bact: ribosomal protein uL14 48 165 IPR005745 GO:0003735|GO:0006412|GO:0015934
Gso8g2575 166 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 19 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2575 Gso-Chr8 43280112 43283533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2575 58 149 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 3.78e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2575 K02874 - gmx:100818301 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0862 18 11721300 11726089 Gso8g2575 8 43280112 43283533 GST