Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2568 ATGGAGAAACATTCTGGGAATTCTTCATCAGCTCATGCTGCTGCAGGTCCATCTGAGATTTCCCCACTTAATATTCCAAAAAAGGCGGGAAGCAGTGCATGGGGAATACCTCGTGCCAGTGATGTGTTCCATGACTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAAAATTATGGTCAACCAGTCGATGTTAACTTGATAACATTAGATAAAGTTCACAAAGAAGACGAGGGACATGATCCTTTTGATGACTTTGAAACCAATGCAATTGGGAGCATGCTTCCCGATGATGAAGAGGACCTTTTGGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGTCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGAACCCCAAGAGAGCCTCAATATCGGTGTGTCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATTGGTCAGTATGCAATCCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGCGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTCGAGGACTCTGAATTACGAACACTATTTGAGCTATATGGGGACATTAGAACTTTATACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCCAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATCAGGGAAACACCACACAAGAGACACCATAAATTTATTGAATTTTATGACGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCTCGTAGAAACTTGATGCAACAACTGAGCCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTAGATTCACCTGTGGCCAGTTCTCCTCCCGGTAGCTGGGCACAATTTGGTAGTCCAGTTGAACAAAATCCATTATCTTCTTTTAGCAAGTCCCCTGGTTTGGGCCATGCCGGTCCCATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCAACAACCTCTCCCAAGATTGCACCGATTGGCAAGGACCCTGGAAGGGCTGCAAATCAGATGTTTGCAAACTCTGGATTAACACAAGGAGCAACCTTTCAGCATTCTATATCCTTTCCTGAGCAAAATGTAAAGGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCAAGTGCATCAAGTATTGGAACACTGTCCGGCCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCCGAGCATTCAAACACTTCTGCCTGGTCTTCATCTTCTGTGGGGCTTCCATTTACATCTAGTGTCCAAAGGCAAGGTTTCCCATATTCTACTAATCGCAGTCCTTTTCTTGGCTCTCACTCTCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCACTTGATAGGCATTTTAGCTACTTCCCTGAGTCACCTGAAGTTTCTCTCATGAGCCCAGTTGCATTTGGGAATTTAAATCACGTTGATGGGAATTTTATGATGAACATAAGTGCTCGTGCATCTGTAGGAGCCAGTGTTGGTCTTTCTGGAAATACCCCTGAAATTAGTTCACCCAATTTCAGAATGATGTCTCTGCCTAGGCATGGTTCCTTGTTCCATGGAAATAGTTTGTATTCTGGACCTGGAGCAACTAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGACCTGACAATGGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCTTCAGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACATCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATTGCCTTCTACAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGCGACCAGGAACCTTTTCTATCCAGCAATTTGAATATATGCATTCGCCAACCAGATGGATCCTATTCAAGTGATTTGTTGGAGAGCCCGAAGGGCAATTTGGATCAGAAGTTAGAGAACGATTAA 2571 0.4271 MEKHSGNSSSAHAAAGPSEISPLNIPKKAGSSAWGIPRASDVFHDSSDVSLFSSSLPVLPHEKLDLTDSENYGQPVDVNLITLDKVHKEDEGHDPFDDFETNAIGSMLPDDEEDLLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFEPQESLNIGVSKISISDGVASNGIGQYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVDSPVASSPPGSWAQFGSPVEQNPLSSFSKSPGLGHAGPINTNHLSGLAAILSPHATTSPKIAPIGKDPGRAANQMFANSGLTQGATFQHSISFPEQNVKASPRPISTFGESSSSASSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSSVQRQGFPYSTNRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEVSLMSPVAFGNLNHVDGNFMMNISARASVGASVGLSGNTPEISSPNFRMMSLPRHGSLFHGNSLYSGPGATNIEGLAERGRSRRPDNGGNQIDSKKLYQLDLDKIFSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEPFLSSNLNICIRQPDGSYSSDLLESPKGNLDQKLEND* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2568 856 MobiDBLite consensus disorder prediction 837 856 - -
Gso8g2568 856 Gene3D - 188 282 IPR012677 -
Gso8g2568 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Gso8g2568 856 Pfam RNA recognition motif 2 696 792 IPR007201 -
Gso8g2568 856 CDD RRM1_MEI2_like 198 274 IPR034453 -
Gso8g2568 856 MobiDBLite consensus disorder prediction 385 405 - -
Gso8g2568 856 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Gso8g2568 856 PANTHER PROTEIN MEI2-LIKE 2 8 852 - -
Gso8g2568 856 Gene3D - 690 785 IPR012677 -
Gso8g2568 856 CDD RRM2_MEI2_like 283 353 - -
Gso8g2568 856 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 852 - -
Gso8g2568 856 SUPERFAMILY RNA-binding domain, RBD 698 783 IPR035979 GO:0003676
Gso8g2568 856 MobiDBLite consensus disorder prediction 1 32 - -
Gso8g2568 856 CDD RRM3_MEI2_like 699 784 IPR034454 -
Gso8g2568 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Gso8g2568 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Gso8g2568 856 SMART rrm1_1 285 353 IPR000504 GO:0003723
Gso8g2568 856 SMART rrm1_1 698 774 IPR000504 GO:0003723
Gso8g2568 856 SMART rrm1_1 200 268 IPR000504 GO:0003723
Gso8g2568 856 Gene3D - 283 381 IPR012677 -
Gso8g2568 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2568 Gso-Chr8 43140085 43149240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2568 194 507 Eukaryotic Initiation Factors Gene Family AT3G16380 23.631 4.96e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2568 - - gmx:100814765 1689.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0872 18 12011068 12019558 Gso8g2568 8 43140085 43149240 GST