Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2554 ATGGTTTTGAGGGTTTCTCTGATTCTGGTTCTCCTTGTGTTACACTGTTCCTGCACTGTGGAATCCATTTGGGGGCATCACAATGATCTCAACAAGAATGGATCTTCTCTTGCTGCAGTCAAGTTTCCTGATCATGCACACTTCAATGCTGTTTCTTCTTCCACAGAAACTGGGTGTAGTTTCTCCAAGTCAGAGAAATTTGAGCCTTCAGTTGCTACCATGGCATCAAATGAAGACACTGATGGTAAAGAGGGAGAGGCTTTTGTGGCAGCAAAACAGCACAAGCAATCTGTGAAACTCAATTTGAGACACCACTCAGTGAGCAAAGATTCGGAGCCTAAAAAATCTGTGGTTGATTCCACAGGGAGAGACTTGAAGAGAATTCAGACCCTTCACAGAAGGGTCATAGAGAAGAAGAACCAAAACACAATTTCAAGGTTGGAGAAAGCACAGGAGCACTCAAAGAAGTCCTATAAGCCACCGACAGTGGCTGCGGCGGCCCCGCCGGAGTATTTATCCGGTCAGCTTATGGCAACCTTGGAGTCAGGGGTCAGTCTTGGCTCTGGTGAGTACTTCATGGATGTGTTTGTTGGCACACCCCCTAAGCATTTTTCTCTAATTCTTGATACTGGTAGTGACCTTAATTGGATTCAATGTGTTCCTTGTTATGCTTGTTTTGAGCAAAATGGACCATATTATGATCCCAAAGATTCTAGTTCTTTTAAGAATATAACTTGCCGTGATCCAAGGTGCCAATTGGTGTCATCCCCAGACCCTCCTCAGCCTTGCAAAGGTGAGACTCAAAGCTGTCCATATTTCTATTGGTATGGAGATAGTTCCAACACAACGGGTGATTTTGCACTTGAAACATTCACTGTGAATCTCACCACACCTGAGGGAAAGCCTGAACTCAAGATTGTTGAGAATGTTATGTTTGGTTGTGGTCATTGGAATAGAGGACTTTTTCATGGTGCTGCTGGATTGCTAGGGTTGGGGAGAGGCCCATTGTCATTTGCTACTCAGCTTCAATCTCTCTATGGTCACTCCTTTTCCTATTGCCTTGTGGATAGGAACAGCAATTCAAGTGTTAGTAGCAAGTTGATATTTGGTGAGGACAAGGAGCTTCTCAGCCACCCCAATTTGAATTTCACTTCTTTTGTTGGTGGCAAAGAGAACCCTGTTGACACATTTTACTATGTCCAGATAAAGTCCATCATGGTTGGTGGTGAGGTGCTGAAGATTCCAGAGGAGACTTGGCATTTGTCAGCACAAGGTGGTGGTGGGGGTACAATCATTGATTCTGGCACCACTTTGACCTACTTTGCTGAACCTGCTTATGAGATTATCAAGGAGGCATTCATGAGGAAAATTAAAGGTTTTCCACTAGTGGAAACCTTTCCCCCTCTAAAGCCATGCTATAATGTGTCTGGTGTTGAGAAAATGGAGCTTCCTGAGTTTGCAATCTTGTTTGCTGATGGAGCTGTGTGGAATTTTCCTGTGGAGAATTACTTCATCCAGATTGAACCTGAAGATGTTGTTTGCTTGGCTGTTTTGGGGACTCCTATGTCTGCACTTTCAATAATTGGAAACTACCAGCAGCAGAATTTTCACATCTTGTATGATGTGAAGAAATCAAGGATTGGATATGCACCGATGAATTGTGCTGATGTTTAA 1674 0.4361 MVLRVSLILVLLVLHCSCTVESIWGHHNDLNKNGSSLAAVKFPDHAHFNAVSSSTETGCSFSKSEKFEPSVATMASNEDTDGKEGEAFVAAKQHKQSVKLNLRHHSVSKDSEPKKSVVDSTGRDLKRIQTLHRRVIEKKNQNTISRLEKAQEHSKKSYKPPTVAAAAPPEYLSGQLMATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCYACFEQNGPYYDPKDSSSFKNITCRDPRCQLVSSPDPPQPCKGETQSCPYFYWYGDSSNTTGDFALETFTVNLTTPEGKPELKIVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFATQLQSLYGHSFSYCLVDRNSNSSVSSKLIFGEDKELLSHPNLNFTSFVGGKENPVDTFYYVQIKSIMVGGEVLKIPEETWHLSAQGGGGGTIIDSGTTLTYFAEPAYEIIKEAFMRKIKGFPLVETFPPLKPCYNVSGVEKMELPEFAILFADGAVWNFPVENYFIQIEPEDVVCLAVLGTPMSALSIIGNYQQQNFHILYDVKKSRIGYAPMNCADV* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2554 557 Pfam Xylanase inhibitor C-terminal 398 550 IPR032799 -
Gso8g2554 557 ProSiteProfiles Peptidase family A1 domain profile. 191 550 IPR033121 -
Gso8g2554 557 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 6 556 - -
Gso8g2554 557 Gene3D Acid Proteases 173 371 IPR021109 -
Gso8g2554 557 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 206 217 IPR001969 GO:0004190|GO:0006508
Gso8g2554 557 CDD pepsin_A_like_plant 190 554 IPR034161 -
Gso8g2554 557 PRINTS Pepsin (A1) aspartic protease family signature 197 217 IPR001461 GO:0004190|GO:0006508
Gso8g2554 557 PRINTS Pepsin (A1) aspartic protease family signature 430 441 IPR001461 GO:0004190|GO:0006508
Gso8g2554 557 PRINTS Pepsin (A1) aspartic protease family signature 526 541 IPR001461 GO:0004190|GO:0006508
Gso8g2554 557 Pfam Xylanase inhibitor N-terminal 191 370 IPR032861 -
Gso8g2554 557 Gene3D Acid Proteases 372 557 IPR021109 -
Gso8g2554 557 SUPERFAMILY Acid proteases 183 555 IPR021109 -
Gso8g2554 557 PANTHER ASPARTYL PROTEASES 6 556 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2554 Gso-Chr8 42887180 42889671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2554 189 554 Miscellaneous Gene Families AT1G77480 28.974 6.15e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2554 K22683 - gmx:100811009 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2554 8 42887180 42889671 Gso8g2554 8 42887180 42889671 ECH
Gso8g2554 8 42887180 42889671 Gso14g0257 14 2239841 2246840 PCT
Gso8g2554 8 42887180 42889671 Gso2g2416 2 48761035 48767945 PCT
Gso14g0257 14 2239841 2246840 Gso8g2554 8 42887180 42889671 PCT
Gso2g2416 2 48761035 48767945 Gso8g2554 8 42887180 42889671 PCT