Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2553 ATGGTTACAAAACCCCTTGTTCTCTTTGTTTCTTTCTTTCTATGTTCCAGTGTTCTAAGAAATGCTAACTCAATTGAACTAGGTTCCAGCATTGTGGCTGGCACCAATAATTCATCTTGGAGATCATCAAATGGTGATTATGCCTTTGGCTTCTACCACCTTCTTAGTGACCACTATCTTGTTGGAATTTGGTTTGACAAGGTTCCAAACAAAACACTGGTTTGGTCAGCAAATCGCGACAATCCGGTTGAAATTGGATCAACCATCAATCTCACATCAAGTGGCGAATTTCTGCTCCAACCTGTCAAAGGGGCTACATTTCAAATCTACAAAGGAACAAACACTCCTGCTGCAACTGCAAAAATGGAGGATAATGGGAATTTGGTGTTGAGGAATTCACTTTCTGAATTTATATGGCAGAGCTTTGATTCTCCCACGGATACTCTTCTATTAGGCCAAACTTTGAAGATGGGTCAGAAGCTCTATTCCAATGCCAATGGATCAGTGGACTACTCAAAAGGGCAATACAGTTTGGAGATCCAACAATCTGATGGAAACATTGTTCTCAAAGCTTTTCGGTTCACCGATGCTGGTTATTGGTCCAGTGGAACTAACCAAAACACAGATGTGAGAATTGTTTTCAACAGCACAACAGCTTTTCTTTACGCGGTCAATGGAACCAACCAAACCATCCATAACATGACAGTCGATCCTTTAACGGGCGCGATCGAAGACTATTATCATCGCGTGCTGATCGATGATCGGGGAAACTTGCAGAAGTTGATTCACCCAAAAGAAAATGGAAGCGATTGGACATCTGTCTGGAACGCCATAGAACTGCCCTGCAGAGTGACCGCGCTTTGTGGGGTGTATGGCTTTTGCAATTCATCTGACAACCAAGCATATAGCTGTGAATGCTTGCCTGGCTATACACATTTGGATCCAAATGTACCTTCCAAAGGGTGTTATCTTAGTACGGAGGCCAATGGCTTGTGTGCTGCAAATTCCTCTAAGGTTGAAGTGAAAGCAATTCAAGATGCTGATATACCCAATAATGATTATTTTTATTTTGATCTACAAGTTATAAACAACATGGATCTGGAAAGTTGCAAGAGGGAACTGATGGATGACTGTCTCTGCATGGCTGCTGTTTTTTATGGCTCAGATTGCCACAAGAAAACGTGGCCAGTTATAAACGCCATAAAAATCTTCCCTGACACTAGCAATCGGGTGATGCTGATTAAAGTTCCTCTTCTTGACAATGATATGGAAAATGAAAAGGATTCACAATCTTTGGTTGTTTTGATAGTGGCTCTTGTCTCTTGTTCCCTACTTGCTGTATTGTTTGCTGCTACTTTTATTTATCATCACCCCATCATTTGTCAACATCTCATACACAAAGGGGAGCCACCAAAGCCAAAGCCTATGGATATCAACCTAAAGGCATTCTCATTCCAGCAGCTGAGAGAAGCAACAAATGGATTCAAGGACAAACTCGGTCGAGGTGCCTATGGTACAGTGTATAGCGGGGTTCTAAACTTGGAGGGTCAACAGGTTGAGGTTGCGGTCAAACAACTGGAGCAAGTAGAAGAGCAAGGTGAGAAAGAATTTGTTACAGAAGTTCAAGTTATTGCTCATACTCATCATAGAAATCTCGTTGGGCTATTGGGCTATTGCAATGAACAAAATCACAGGCTTTTGGTTTATGAGAAAATGGAAAATGGGACACTCTCCAACTTTCTTTTTGGAGAAGGGGATCATAGACCCAGTTGGGAGAGTAGAGTAAGAATTGTGATTGAGATTGCAAGAGGCTTATTGTATCTGCATGAGGAGTGTGACCAACAAATCATCCATTGCGACATAAAGCCTCAGAATGTTCTTCTCGACTCGAGTTACACCGCAAAGATTTCAGATTTTGGACTGGCAAAGCTTCTAATGAAAGACAAGACTCGAACAAGCACCAATGCTAGAGGGACAGTGGGTTATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTTGATATCTACAGCTTTGGCGTTGTGTTGTTGGAAACCATATTTTGCAGAAGGCACATCGAGTTACACCGAATCAATGACGAAACAACGGGTGGTGATGACATGATACTCATAGATTGGGTTCTGTATCTGGCAAAAGAAAACAGTTTAAGAGCAGCTGTGGTTGATGATCTTGAAGTTGAAAGTGATTTCAAACGGTTTGAAAGAATGGTAATGGTTGGATTGTGGTGCGTGTATCCGAATTCAACTCTTCGACCATCTATGAAAGTGGTGGCACAGATGTTGGAAGGAAATATAGAAGTGGGTGTTCCCCCACTCAACTAA 2352 0.4188 MVTKPLVLFVSFFLCSSVLRNANSIELGSSIVAGTNNSSWRSSNGDYAFGFYHLLSDHYLVGIWFDKVPNKTLVWSANRDNPVEIGSTINLTSSGEFLLQPVKGATFQIYKGTNTPAATAKMEDNGNLVLRNSLSEFIWQSFDSPTDTLLLGQTLKMGQKLYSNANGSVDYSKGQYSLEIQQSDGNIVLKAFRFTDAGYWSSGTNQNTDVRIVFNSTTAFLYAVNGTNQTIHNMTVDPLTGAIEDYYHRVLIDDRGNLQKLIHPKENGSDWTSVWNAIELPCRVTALCGVYGFCNSSDNQAYSCECLPGYTHLDPNVPSKGCYLSTEANGLCAANSSKVEVKAIQDADIPNNDYFYFDLQVINNMDLESCKRELMDDCLCMAAVFYGSDCHKKTWPVINAIKIFPDTSNRVMLIKVPLLDNDMENEKDSQSLVVLIVALVSCSLLAVLFAATFIYHHPIICQHLIHKGEPPKPKPMDINLKAFSFQQLREATNGFKDKLGRGAYGTVYSGVLNLEGQQVEVAVKQLEQVEEQGEKEFVTEVQVIAHTHHRNLVGLLGYCNEQNHRLLVYEKMENGTLSNFLFGEGDHRPSWESRVRIVIEIARGLLYLHEECDQQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTSTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVVLLETIFCRRHIELHRINDETTGGDDMILIDWVLYLAKENSLRAAVVDDLEVESDFKRFERMVMVGLWCVYPNSTLRPSMKVVAQMLEGNIEVGVPPLN* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2553 783 CDD STKc_IRAK 499 773 - -
Gso8g2553 783 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 782 - -
Gso8g2553 783 SUPERFAMILY Protein kinase-like (PK-like) 473 772 IPR011009 -
Gso8g2553 783 Pfam S-locus glycoprotein domain 243 311 IPR000858 GO:0048544
Gso8g2553 783 Pfam Protein tyrosine and serine/threonine kinase 495 690 IPR001245 GO:0004672|GO:0006468
Gso8g2553 783 SMART serkin_6 493 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2553 783 Gene3D - 143 237 IPR036426 -
Gso8g2553 783 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 782 - -
Gso8g2553 783 CDD B_lectin 42 145 IPR001480 -
Gso8g2553 783 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 205 IPR036426 -
Gso8g2553 783 Coils Coil 512 532 - -
Gso8g2553 783 Gene3D Phosphorylase Kinase; domain 1 475 570 - -
Gso8g2553 783 PIRSF SRK 1 783 IPR024171 GO:0004674
Gso8g2553 783 ProSiteProfiles Protein kinase domain profile. 493 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2553 783 Gene3D - 18 142 IPR036426 -
Gso8g2553 783 SMART blect_4 31 145 IPR001480 -
Gso8g2553 783 Gene3D Transferase(Phosphotransferase) domain 1 572 777 - -
Gso8g2553 783 Pfam D-mannose binding lectin 72 159 IPR001480 -
Gso8g2553 783 ProSiteProfiles Bulb-type lectin domain profile. 16 143 IPR001480 -
Gso8g2553 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Gso8g2553 783 ProSitePatterns Protein kinases ATP-binding region signature. 499 524 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2553 Gso-Chr8 42857993 42860867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2553 481 782 Receptor kinase-like Gene Family AT5G65600 41.694 2.21e-67 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso8g2553 PK_Tyr_Ser-Thr 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2553 - - gmx:100779807 1573.53