Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2550 ATGAATGCTAAGGTACATAGCTCTGATGATACCAAGAAGGATGAAGAAGTTGTGCTTCCTGGATTTAGATTCCATCCCACAGATGAAGAGCTTGTTGGGTTTTATTTGCAGAGAAAGGTGGACAAGAAGCCTCTAAAAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAGGTGAATTCATTTGGGGAGAAAGAGTGGTATTTTTTCTGCATAAGAGGGAGGAAGTACAGGAACAGCGTGAGGCCAAACAGGGTAACTAGGTCAGGGTTCTGGAAGGCCACAGGGATTGACAAGTCCATATATTGCGTGAAAGAGCCACATGAATGCATTGGCCTCAAGAAGTCATTGGTCTACTATCGTGGAAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCCAATGCAAAATCCAACCCCAATGACCTTCAAGAAGCTGAGGTGTGGACACTGTGCAGGATATTCAAACGCATCCCATCTTTCAAAAAGTACACTCCAAATTTGAAAGACTCAACACCAGTCACCAAACCAAACCCTGTGAATTCCAACACATCCACCTTAAATTCTGACAATTGCGAGCCATATTTGATCTGCAGAGACCCTATGGTGATGCAACAAATCGAAAGAAAACCAGTTATTGGACAAGTTGATGAAAAGAAACACATGTTTCTGGGCCAGTTTGGTCCACTACCCCATCATCTTCAGGCCCCATCAACTACCCCTTACCCAAATTTTTGGGACCAGAATAATGTTGAGGATTATACATTTGCCAATGAGAATTGGGATGACCTAAGATCTGTGGTTCAGTTTGCAATTGATCCATCCACGGTGTTTGATTGTACAGGAACATATATTCCACCCTACTTTTCTTAG 915 0.4262 MNAKVHSSDDTKKDEEVVLPGFRFHPTDEELVGFYLQRKVDKKPLKIELIKQVDIYKYDPWDLPKVNSFGEKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNAKSNPNDLQEAEVWTLCRIFKRIPSFKKYTPNLKDSTPVTKPNPVNSNTSTLNSDNCEPYLICRDPMVMQQIERKPVIGQVDEKKHMFLGQFGPLPHHLQAPSTTPYPNFWDQNNVEDYTFANENWDDLRSVVQFAIDPSTVFDCTGTYIPPYFS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2550 304 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Gso8g2550 304 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Gso8g2550 304 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 295 - -
Gso8g2550 304 PANTHER - 2 295 - -
Gso8g2550 304 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Gso8g2550 304 ProSiteProfiles NAC domain profile. 18 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2550 Gso-Chr8 42825455 42831742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2550 8 171 NAC Transcription Factor Family AT5G39820 59.016 5.34e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g2550 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2550 - - gmx:100810472 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2550 8 42825455 42831742 Gso8g2550 8 42825455 42831742 ECH
Gso18g0967 18 14796632 14799496 Gso8g2550 8 42825455 42831742 GST
Gso8g2550 8 42825455 42831742 Gso14g0262 14 2297343 2301106 PCT
Gso8g2550 8 42825455 42831742 Gso2g2413 2 48728614 48731960 PCT
Gso14g0262 14 2297343 2301106 Gso8g2550 8 42825455 42831742 PCT
Gso2g2413 2 48728614 48731960 Gso8g2550 8 42825455 42831742 PCT