Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2533 ATGAAGAATTCTAAGAAAACTTGCGCGCGGAAGTACCACAAATCGGAAAATCCACGCTTGCGGTGGACACCTGAACTCCATGAATACTTTGTTGAAGTTGTGGAAGGTCTTGGCGGAAAAAACAAGGCAACCCCAAAGAGCATTCTGCATATGATGCATGTGAAAGGACTGAGGATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGAACATGAAGGGAGGTACGATTCTCACATCAATGCAACAGGAAATGGAAGAAAATGTGCATGTTAAGGATCATCACCCAATCTGCTCCAACTGTTCATCCCAAAGCATAATCTTCAGATCACAAGGAACAAAATTTAAATTAAAGGCATCAAAATATGATACGGGGATTGTCAATCAAGAAATTCACCCGCTAGAAAATAAAGGACTTTCGCAGACCAGTGAAACTGATTATGATCTAAATCAGGAACCCGAGTCAAGTGCATGCTTATTTAGTGAATCGTCAAATGAAGAAAAGAGTAGGACAATGAAATTTCTTGATCTCTCACTCTCTTTCGGCTCTTCACCAATTCCAACAATGGACGGTGATCAAGAGAGAATGCGTTTTTCTTCACCAAATACAGCAGATAATCATGTTATCGATTCTAATTCTGTACAATCTCATGGGAGCAATTATATAAATTTAGACCTAACAATATGA 687 0.3916 MKNSKKTCARKYHKSENPRLRWTPELHEYFVEVVEGLGGKNKATPKSILHMMHVKGLRISHIKSHLQMYRNMKGGTILTSMQQEMEENVHVKDHHPICSNCSSQSIIFRSQGTKFKLKASKYDTGIVNQEIHPLENKGLSQTSETDYDLNQEPESSACLFSESSNEEKSRTMKFLDLSLSFGSSPIPTMDGDQERMRFSSPNTADNHVIDSNSVQSHGSNYINLDLTI* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2533 228 Gene3D - 17 74 - -
Gso8g2533 228 SUPERFAMILY Homeodomain-like 16 71 IPR009057 -
Gso8g2533 228 Pfam Myb-like DNA-binding domain 20 70 IPR001005 -
Gso8g2533 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Gso8g2533 228 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 9 140 - -
Gso8g2533 228 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 140 IPR044848 GO:0003700
Gso8g2533 228 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2533 Gso-Chr8 42628924 42633595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2533 9 139 G2-like Transcription Factor Family AT2G42660 34.000 6.22e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso8g2533 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2533 - - gmx:100791958 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2533 8 42628924 42633595 Gso14g0269 14 2361039 2363224 PCT
Gso8g2533 8 42628924 42633595 Gso2g2405 2 48632609 48636206 PCT
Gso14g0269 14 2361039 2363224 Gso8g2533 8 42628924 42633595 PCT
Gso2g2405 2 48632609 48636206 Gso8g2533 8 42628924 42633595 PCT