Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2524 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCTCCACCAATCAAAAGAAGCCCATGATGGGGGTGGACCAAGAGCTTGTGGAGCTTCTGTGGCAAAATGGCCAGGTAGTGCACAGCCAAACTCATAGAAAACCGGTTGTGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTGTCTGAACTGGCACCTTGTGAAGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGGAAAATTTACCAAATTGGATGCTTCTAGTGCCCCTCATGTGACTGTAAGTTCACAATTACCTACCATGAAATCCTCCTCTTTTCAGGATTTCTCAGGAATTCCTATACCGGCCCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAACAATAATCACTTGGGTGGATCATGTAAGGTCCAAAACTTCTCTCACTTTTCAGCACCCCTTAATGTTTCTTCAGCATCGGCTAACGTGCATTTTGGAGACAAAATTACTGGTAACATGTCAAGAAATGAGATTAGGGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATCCCCCAAGATCCAGATGCTAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCAGTCGAGCCAGAAGCTGTTAGAGACGATGTGCCGAAAACAATTCCTCAGAAGGAGAAAGGGAAATCAGAGATGCTTGAACCAGCTGTGACTTCATCATCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCATTATCTACGAGAAACCAGGGCCAAAAAAGAAAAGGAATAGACGTGGAAGAATCTGAGGAGCAAAGTGAGGACACAGAACTTAAATCAGCACTTGGAAACAAGTCATCTCAACGCACAGGGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCGGAAAGGAGAAGGAGAGACAGGATCAATGAGAAGATGAAGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCGATGTTGGAAGAGGCAATTGAATACTTGAAATCACTTCAGCTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATAATGTTTCCAGGAATTCAGCACTACATGTCACAAATGGGCATGGGAATGGCTAGACCGCCTTTCCCTCCTCCTATTCATAATCCGATGCAATTACCGAGAGTGCCGCTTGATAAGTCTGTATCTGCATCTCAGACACCAAACCAGACATTAATGTGCCAAAATCCCATTTTGGGTGCATTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCGGAGCAATATGTGCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATGTATTCAGATATGGTCCCCAGGGAGTACAACATAGTCAAACAATGATTACACCCAGCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGGCAAAATGGGTTAA 1578 0.436 MNNSVPDWNFGSDSCVTSTNQKKPMMGVDQELVELLWQNGQVVHSQTHRKPVVNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELAPCEVESYKQIKPFEEGKFTKLDASSAPHVTVSSQLPTMKSSSFQDFSGIPIPAPRFHVSDSPQKNNNHLGGSCKVQNFSHFSAPLNVSSASANVHFGDKITGNMSRNEIRECSLMTVGSSYCGSNHIPQDPDASRASSNGVWTTTLSVEPEAVRDDVPKTIPQKEKGKSEMLEPAVTSSSGGSGSSLGKTCSLSTRNQGQKRKGIDVEESEEQSEDTELKSALGNKSSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPIMFPGIQHYMSQMGMGMARPPFPPPIHNPMQLPRVPLDKSVSASQTPNQTLMCQNPILGAFNYQNQMQNPALSEQYVRYMGYHLMQNASQPMNVFRYGPQGVQHSQTMITPSSNSSGNMSGAANIDEAVSGKMG* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2524 525 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 506 IPR031066 -
Gso8g2524 525 SMART finulus 333 382 IPR011598 GO:0046983
Gso8g2524 525 Coils Coil 333 353 - -
Gso8g2524 525 MobiDBLite consensus disorder prediction 309 324 - -
Gso8g2524 525 MobiDBLite consensus disorder prediction 501 525 - -
Gso8g2524 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Gso8g2524 525 PANTHER TRANSCRIPTION FACTOR PIF5 1 506 - -
Gso8g2524 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 388 IPR036638 GO:0046983
Gso8g2524 525 Gene3D - 322 383 IPR036638 GO:0046983
Gso8g2524 525 CDD bHLH_AtPIF_like 327 390 - -
Gso8g2524 525 Pfam Helix-loop-helix DNA-binding domain 331 377 IPR011598 GO:0046983
Gso8g2524 525 MobiDBLite consensus disorder prediction 235 334 - -
Gso8g2524 525 MobiDBLite consensus disorder prediction 241 260 - -
Gso8g2524 525 MobiDBLite consensus disorder prediction 262 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2524 Gso-Chr8 42525815 42531514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2524 1 77 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 34.615 1.62e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2524 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2524 K16189 - gmx:100800166 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2524 8 42525815 42531514 Gso8g2524 8 42525815 42531514 ECH
Gso8g2524 8 42525815 42531514 Gso14g0275 14 2411391 2416814 PCT
Gso8g2524 8 42525815 42531514 Gso2g2400 2 48580876 48585077 PCT
Gso14g0275 14 2411391 2416814 Gso8g2524 8 42525815 42531514 PCT
Gso2g2400 2 48580876 48585077 Gso8g2524 8 42525815 42531514 PCT