Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2519 ATGACCAGCAGTGTGATTCTCAGAAGATCCTCTTCCGTAATCTCGCGCCGCTTCTTCGCCGCTCTCGCCTCCGTCGAGCCGCTTCCTCGCAGGTTCCCCGCCGACAGGTACGGTGTCTCCGGCGACGGATCCCGAACCATTCACACGAATCCCGGACCGTTGAATTTCCGCGTGTCGGTGGTTCCTCGCGCGGCGCAGTTCGCTGTCGAGCGCGATTACTCTAACTACGAGGAGGTTAGCGGCGCGAACAGTGACGAAGGACTAGAGGTCGCGAATCTCGGGATCGCTCCGCAGATCGTAGATGCTCTGGCCAAGAAAGGGATTGCGAAGCTCTTCCCCATTCAGAGAGCTGTGCTGGAACCTGCAATGCAAGGACGTGATATGATTGGTCGAGCTAGAACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGTATCATTCAGTTTAATGCTAAGCATGGGCAAGGAAGACATCCTTTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCGCGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCTAACTTGGCCATGATCTGTCTTTATGGGGGTATGCCCATCCAGCAACAAATGAGGCAGCTTAATTATGGCGTAGATATTGCAGTAGGCACTCCTGGTCGAATTATTGATCTCCTCAACAGGGGGGCACTGAATTTAAAGAATGTCAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCCTGGAAGGGTTGTCTCCAAATCGTCAGACCCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAATATTACCCGCAATTACCTGAACAACCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACAGAACATGCGAATGGAGGAAAGTGTATTGTTTTCACTCAAACGAAACGTGATGCTGATCGATTATCATATGTCATGGCAAAAAGCCTTAGATGCGAGGCTTTGCATGGAGATATTTCACAAACTCAGAGGGAAAAAACTCTTGCTGGCTTCAGAAACAACAATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCCAATGTTGATCTTGTAATACATTACGATCTTCCCAATTCATCTGAGATATTTGTTCATCGATCTGGACGAACTGGCCGTGCTGGGAAGAAAGGAAGTGCGATTCTTGTTTACACACAAGGCCAATTCAGGGCTGTGCAGACTATTCAGCGTGATGTTGGATGCAAATTTACTGAGCTACCAAAGATTGATGCTCCTGCTGGATCAGCAGAGATGTTTACTGGCATGGGTGGTGGTCGATCTGGCTCTATGAGGGATCGTCAATCTGGAGGTACAGGTTTTGGTCGCAATCCTGGACTTGGTCGTTCTGGGAGTTACGGAAACTCTGGATTTGGCCGATCTAGCTATGGAAATTCCAGTGAGATGAATAGATATGATGGTGGCTTTGGTTCTGGTCAAGCAGGAACTCGATTTGGTGGAAAGTCTCGCCCCAGTGGTTTTGGAGGATTTGGTAGTTCAAACCAATCTGGCAGTTTTAGAAATTTTGGGTCGGGTCAATCTGGTGCATATGGTGACAGAATGTCAAGCCAAAGCAGCACCTTTGGTAATTTACATGGTGGTGGTTTCGGTGCTTTTGGGAATAATCCAAATGTTGACAGTTACAACAGAGGAAAGGCTTTTTAA 1818 0.4697 MTSSVILRRSSSVISRRFFAALASVEPLPRRFPADRYGVSGDGSRTIHTNPGPLNFRVSVVPRAAQFAVERDYSNYEEVSGANSDEGLEVANLGIAPQIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDSIIQFNAKHGQGRHPLALVLAPTRELARQVEKEFNEAAPNLAMICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRGALNLKNVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGDISQTQREKTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILVYTQGQFRAVQTIQRDVGCKFTELPKIDAPAGSAEMFTGMGGGRSGSMRDRQSGGTGFGRNPGLGRSGSYGNSGFGRSSYGNSSEMNRYDGGFGSGQAGTRFGGKSRPSGFGGFGSSNQSGSFRNFGSGQSGAYGDRMSSQSSTFGNLHGGGFGAFGNNPNVDSYNRGKAF* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2519 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 466 IPR001650 -
Gso8g2519 605 Gene3D - 314 470 IPR027417 -
Gso8g2519 605 CDD DEADc 99 294 - -
Gso8g2519 605 MobiDBLite consensus disorder prediction 466 576 - -
Gso8g2519 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 293 IPR014001 -
Gso8g2519 605 MobiDBLite consensus disorder prediction 545 576 - -
Gso8g2519 605 Pfam Helicase conserved C-terminal domain 322 427 IPR001650 -
Gso8g2519 605 Pfam DEAD/DEAH box helicase 112 281 IPR011545 GO:0003676|GO:0005524
Gso8g2519 605 PANTHER RNA HELICASE 4 565 - -
Gso8g2519 605 SMART ultradead3 107 310 IPR014001 -
Gso8g2519 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 445 IPR027417 -
Gso8g2519 605 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 4 565 - -
Gso8g2519 605 CDD SF2_C_DEAD 307 436 - -
Gso8g2519 605 Gene3D - 89 297 IPR027417 -
Gso8g2519 605 MobiDBLite consensus disorder prediction 500 524 - -
Gso8g2519 605 SMART helicmild6 347 427 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2519 Gso-Chr8 42422911 42430603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2519 92 459 Eukaryotic Initiation Factors Gene Family AT3G19760 32.258 1.11e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2519 - - gmx:100815635 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2519 8 42422911 42430603 Gso14g0286 14 2498418 2503299 PCT
Gso8g2519 8 42422911 42430603 Gso2g2392 2 48508263 48513284 PCT
Gso14g0286 14 2498418 2503299 Gso8g2519 8 42422911 42430603 PCT
Gso2g2392 2 48508263 48513284 Gso8g2519 8 42422911 42430603 PCT