Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2518 ATGGCTACTACCCTTTCTTCTATCAGTTTTGTACACTTTTGCATGCACTTCCTCCTTGTGTGTCTCACTAGTCCTGCATATGTTTCTTCACTCCCTCTTTCCCTGAGAAGGCAAGCTTCAATCCTTGTTTCTATGAAGCAAGATTTTGGAGTTGCAAATTCTTCTCTGAGGAGCTGGGACATGTCAAACTACATGTCCCTTTGCAGCACTTGGTATGGCATTGAGTGTGACCATCATGACAACATGTCTGTGGTGTCACTTGACATATCCAATTTGAATGCCTCAGGGTCACTTTCACCTTCCATCACAGGACTCTTGAGCCTTGTGAGTGTCTCACTCCAGGGAAATGGCTTCTCTGGGGAGTTTCCAAGGGACATTCACAAGCTACCAATGCTGAGGTTCCTCAACATGTCCAACAACATGTTCAGTGGAAACTTGAGTTGGAAATTCTCTCAGCTGAAGGAGCTTGAAGTGCTGGATGTCTATGACAATGCTTTCAATGGCTCACTTCCTGAAGGTGTCATCAGTCTCCCAAAGATCAAGCACTTGAACTTTGGAGGGAACTACTTCTCTGGTGAAATCCCTCCAAGCTATGGAGCCATGTGGCAGCTGAACTTTCTGTCCCTTGCAGGGAATGATTTGAGAGGCTTCATACCAAGTGAGCTTGGGAATCTCACTAACTTGACTCATCTTTACTTAGGATACTACAATCAGTTTGATGGTGGAATCCCTCCTCAATTTGGTAAGCTGACCAATTTGGTTCATCTTGACATTGCAAACTGTGGCTTGACAGGTCCAATTCCTGTTGAGTTAGGAAACCTCTATAAGTTAGACACTCTTTTCTTGCAAACCAATCAGCTAAGTGGTTCAATCCCTCCCCAGTTAGGAAACTTGACCATGTTAAAAGCCCTTGATCTATCATTCAACATGCTCACAGGAGGTATCCCTTATGAGTTCTCTGCACTTAAAGAGCTTACCCTCTTGAACTTGTTTATAAACAAGTTGCATGGAGAAATTCCTCACTTCATTGCTGAGCTACCTAGATTGGAGACTCTGAAGCTTTGGCAGAACAACTTCACTGGAGAGATTCCTTCAAACCTTGGCCAGAATGGAAGGCTGATTGAGCTTGACTTGTCAACAAATAAGCTCACTGGTTTGGTGCCAAAATCTCTATGCCTTGGAAAGAGGCTGAAAATCTTGATCCTACTCAAGAACTTTCTGTTTGGATCTTTGCCGGATGATCTTGGTCAATGCTACACACTCCAAAGAGTCCGTTTGGGGCAGAACTATTTAACTGGGCCACTGCCACATGAGTTTCTTTATTTGCCTGAGCTACTACTTGTGGAGCTACAGAACAATTATCTTAGTGGTGGCTTTCCACAATCAATAACAAGCAGCAACACATCCTCAAAACTAGCACAGTTGAACCTATCAAACAACCGGTTTTTGGGGTCTCTTCCGGCCTCAATTTCAAATTTTCCAGACTTGCAAATCCTTCTGCTCAGTGGAAACAGATTCTCAGGTGAAATACCACCAGATATAGGGAGGTTGAAAAGTATCCTCAAGTTGGATATTAGTGCCAACAACTTTTCAGGTACTATTCCACCTGAGATAGGTAACTGTGTCTTACTGACCTATTTAGATTTGAGCCAAAACCAACTCTCAGGTCCTATTCCAGTCCAATTTTCTCAAATTCACATATTAAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAGCCTTCCCAAGGAACTTAGGGCCATGAAGGGCTTAACTTCAGCAGATTTCTCTCACAATAACTTCTCAGGATCAATACCTGAGGGGGGCCAATTCTCAATATTTAATTCCACATCATTTGTTGGTAATCCTCAGCTATGTGGATATGATTCCAAACCATGCAACCTTTCTTCAACAGCTGTGTTGGAATCTCAAACAAAAAGCAGTGCAAAACCCGGTGTTCCCGGGAAATTCAAGTTCCTCTTTGCATTGGCATTGTTGGGGTGCTCATTGGTGTTTGCAACATTGGCCATCATCAAGAGTAGGAAGACAAGGAGGCACTCCAATTCATGGAAGTTAACAGCATTCCAGAAGCTGGAATATGGGAGTGAGGACATCAAAGGGTGCATAAAGGAAAGCAATGTGATAGGAAGAGGAGGATCTGGTGTTGTGTACAGAGGAACCATGCCAAAGGGAGAGGAAGTGGCAGTGAAGAAGCTCTTAGGAAACAACAAAGGATCTTCCCATGACAATGGCCTCTCTGCAGAAATAAAAACATTGGGGAGAATCAGGCACAGGTACATTGTGAAGCTACTAGCATTTTGTTCGAACAGAGAGACCAATTTGCTTGTTTATGATTACATGCCAAATGGAAGCTTGGGAGAAGTCTTGCATGGGAAGAGGGGTGAGTTTCTCAAGTGGGACACTAGGCTCAAAATAGCCATAGAAGCTGCAAAAGGACTTTGCTATTTGCACCATGATTGTTCCCCTTTGATCATCCATAGGGATGTCAAGTCAAACAACATACTGCTGAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCATGCAAGATAATGGGGCATCTGAGTGCATGTCTTCCATTGCTGGCTCTTATGGCTATATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTTTATAGCTTTGGAGTGGTGCTGCTAGAACTGATAACGGGCAGAAGGCCGGTGGGGGATTTTGGTGAAGAAGGATTAGACATTGTTCAATGGACCAAGTTGCAAACCAATTGGAACAAAGAGATGGTGATGAAGATCCTTGATGAGAGGCTAGATCACATTCCTTTAGCTGAAGCAATGCAGGTGTTTTTTGTGGCAATGTTGTGTGTTCATGAACACAGTGTGGAGAGGCCAACCATGAGGGAAGTGGTTGAAATGCTTGCACAAGCAAAGCAACCAAACACATTTCAGATGCAGTGA 2985 0.4338 MATTLSSISFVHFCMHFLLVCLTSPAYVSSLPLSLRRQASILVSMKQDFGVANSSLRSWDMSNYMSLCSTWYGIECDHHDNMSVVSLDISNLNASGSLSPSITGLLSLVSVSLQGNGFSGEFPRDIHKLPMLRFLNMSNNMFSGNLSWKFSQLKELEVLDVYDNAFNGSLPEGVISLPKIKHLNFGGNYFSGEIPPSYGAMWQLNFLSLAGNDLRGFIPSELGNLTNLTHLYLGYYNQFDGGIPPQFGKLTNLVHLDIANCGLTGPIPVELGNLYKLDTLFLQTNQLSGSIPPQLGNLTMLKALDLSFNMLTGGIPYEFSALKELTLLNLFINKLHGEIPHFIAELPRLETLKLWQNNFTGEIPSNLGQNGRLIELDLSTNKLTGLVPKSLCLGKRLKILILLKNFLFGSLPDDLGQCYTLQRVRLGQNYLTGPLPHEFLYLPELLLVELQNNYLSGGFPQSITSSNTSSKLAQLNLSNNRFLGSLPASISNFPDLQILLLSGNRFSGEIPPDIGRLKSILKLDISANNFSGTIPPEIGNCVLLTYLDLSQNQLSGPIPVQFSQIHILNYLNVSWNHLNQSLPKELRAMKGLTSADFSHNNFSGSIPEGGQFSIFNSTSFVGNPQLCGYDSKPCNLSSTAVLESQTKSSAKPGVPGKFKFLFALALLGCSLVFATLAIIKSRKTRRHSNSWKLTAFQKLEYGSEDIKGCIKESNVIGRGGSGVVYRGTMPKGEEVAVKKLLGNNKGSSHDNGLSAEIKTLGRIRHRYIVKLLAFCSNRETNLLVYDYMPNGSLGEVLHGKRGEFLKWDTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFMQDNGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGDFGEEGLDIVQWTKLQTNWNKEMVMKILDERLDHIPLAEAMQVFFVAMLCVHEHSVERPTMREVVEMLAQAKQPNTFQMQ* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2518 994 SMART serkin_6 710 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2518 994 SUPERFAMILY Protein kinase-like (PK-like) 706 982 IPR011009 -
Gso8g2518 994 PANTHER UNNAMED PRODUCT 13 991 - -
Gso8g2518 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Gso8g2518 994 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 13 991 - -
Gso8g2518 994 Gene3D Ribonuclease Inhibitor 294 372 IPR032675 -
Gso8g2518 994 Gene3D Phosphorylase Kinase; domain 1 677 787 - -
Gso8g2518 994 Gene3D Transferase(Phosphotransferase) domain 1 788 994 - -
Gso8g2518 994 SUPERFAMILY L domain-like 372 632 - -
Gso8g2518 994 Gene3D Ribonuclease Inhibitor 195 293 IPR032675 -
Gso8g2518 994 Gene3D Ribonuclease Inhibitor 36 194 IPR032675 -
Gso8g2518 994 Gene3D Ribonuclease Inhibitor 373 638 IPR032675 -
Gso8g2518 994 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Gso8g2518 994 Pfam Protein kinase domain 712 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2518 994 ProSiteProfiles Protein kinase domain profile. 710 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2518 994 SMART LRR_typ_2 274 298 IPR003591 -
Gso8g2518 994 SMART LRR_typ_2 153 177 IPR003591 -
Gso8g2518 994 SMART LRR_typ_2 371 393 IPR003591 -
Gso8g2518 994 SMART LRR_typ_2 346 370 IPR003591 -
Gso8g2518 994 SMART LRR_typ_2 493 517 IPR003591 -
Gso8g2518 994 SUPERFAMILY RNI-like 86 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2518 Gso-Chr8 42405860 42410674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2518 24 984 Receptor kinase-like Gene Family AT5G65700 57.098 0.0 1078
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso8g2518 Pkinase 7.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2518 - - gmx:100815103 1940.62