Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2516 ATGGAACGAAGTGGCGGAATGGTAACTGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGCTCTGATAGTAGGTCTAAACCCTTGAAGAATTTGAATGGTCAGAGTTGTCAAATATGTGGTGATACCATTGGATTAATGGCTACTGGTGATGTCTTTGTCGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAACATATGAGCCAGTCTTGTCCCCAGTGCAAGACTGCATTCACAAGTCACCAAGAGGGTGCTGAAGTGGAGGGAGATGATGATGATGAAGACGATGCTGATGATCTAGATAATGAGATCAACTATGGCCAAGGAAACAGTTCCAAGGCGGGGATGCTATGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAACCCCCATCTAGCAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCTATAGGTCAATCCGAAAAGGTTCACTCACTTTCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCAGAGATTGGAGGTGAAAGTGCCGGAACTTCGGCCTCTCAGCCAGATGCCGGTTCAAATGCTGGTACAGAGCGTGTTCAGGGGACAGGGGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAACGGCTAAAGAGGCTACTGAGGAACCGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATACTTGATTGATTTGGAAACAAGAGTTAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAGAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAATGGTACCAATAATGCTGAGTGA 975 0.4544 MERSGGMVTGSHERNELVRVRHGSDSRSKPLKNLNGQSCQICGDTIGLMATGDVFVACHECGFPLCHSCYEYELKHMSQSCPQCKTAFTSHQEGAEVEGDDDDEDDADDLDNEINYGQGNSSKAGMLWEEDADLSSSSGHDSQIPNPHLANGQPMSGEFPCATSDAQSMQTTSIGQSEKVHSLSYADPKQPGPESDEEIRRVPEIGGESAGTSASQPDAGSNAGTERVQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNNGTNNAE* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2516 324 SMART brlzneu 244 308 IPR004827 GO:0003700|GO:0006355
Gso8g2516 324 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Gso8g2516 324 MobiDBLite consensus disorder prediction 96 112 - -
Gso8g2516 324 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 166 317 IPR044280 GO:0000981|GO:0045944
Gso8g2516 324 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 166 317 - -
Gso8g2516 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 246 309 IPR004827 GO:0003700|GO:0006355
Gso8g2516 324 CDD mRING-HC-C4C4_CesA_plant 37 86 - -
Gso8g2516 324 MobiDBLite consensus disorder prediction 1 28 - -
Gso8g2516 324 Gene3D Single helix bin 267 308 - -
Gso8g2516 324 MobiDBLite consensus disorder prediction 231 267 - -
Gso8g2516 324 Pfam bZIP transcription factor 245 306 IPR004827 GO:0003700|GO:0006355
Gso8g2516 324 MobiDBLite consensus disorder prediction 209 229 - -
Gso8g2516 324 CDD bZIP_HY5-like 249 300 - -
Gso8g2516 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 251 266 IPR004827 GO:0003700|GO:0006355
Gso8g2516 324 MobiDBLite consensus disorder prediction 92 267 - -
Gso8g2516 324 MobiDBLite consensus disorder prediction 157 180 - -
Gso8g2516 324 Coils Coil 243 312 - -
Gso8g2516 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Gso8g2516 324 SUPERFAMILY RING/U-box 23 109 - -
Gso8g2516 324 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Gso8g2516 324 SUPERFAMILY Leucine zipper domain 248 306 IPR046347 GO:0003700|GO:0006355
Gso8g2516 324 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2516 Gso-Chr8 42371460 42375030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2516 192 305 bZIP Transcription Factor Family AT5G11260 74.783 3.09e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso8g2516 zf-UDP 3.3e-34 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2516 K10999 - gmx:547806 625.55