Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2512 ATGCATCCATCCTTTTCCATGTTGTCATTGCAGTTAAAAGTAACTGAGTTGCAGTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCAGCCCAGCTTAAGGCCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATTCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTCACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATAACCTATGGACACAAAAACCATCGTTATGCAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCATCTTTGCAAGATCGATTGCTTTGTCAAGGACAGGATCCGTATGATATGGAGCCTTCTAGTCATGTAACACCTAATGGATCTCTTCTGCCTCCCAATACCAAGGGTGCAAATAACATGGGACATAAACCATCAGGATATTTGAAAGTGAAGGGAGAGATAGAGCATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGATGGTCCACTACTTAGTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGTCAAATTGCAGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCAGTGAAAAAACAGTCCAGTCTCAGTTCTACTTGTAAAAAGCAGCTAATGTTGTGA 915 0.3945 MHPSFSMLSLQLKVTELQSEENKLSMEKNKKRRLKTPAQLKALEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRQDRSSGVIQDRGSGLVQDSCGSTKHVHYRYLDPKEVESHGLYNHGFSAADITYGHKNHRYAENDSATDNTSSESSSSLQDRLLCQGQDPYDMEPSSHVTPNGSLLPPNTKGANNMGHKPSGYLKVKGEIEHAAITAVKKQLGKHYREDGPLLSVEFDTIPPEAFECQIADLANEAYYAANPALPNSPEVSAVKKQSSLSSTCKKQLML* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2512 304 MobiDBLite consensus disorder prediction 188 211 - -
Gso8g2512 304 MobiDBLite consensus disorder prediction 182 216 - -
Gso8g2512 304 Pfam Homeodomain 30 85 IPR001356 GO:0003677
Gso8g2512 304 Gene3D - 18 101 - -
Gso8g2512 304 MobiDBLite consensus disorder prediction 157 176 - -
Gso8g2512 304 SUPERFAMILY Homeodomain-like 26 89 IPR009057 -
Gso8g2512 304 MobiDBLite consensus disorder prediction 160 176 - -
Gso8g2512 304 SMART HOX_1 28 90 IPR001356 GO:0003677
Gso8g2512 304 CDD homeodomain 30 86 IPR001356 GO:0003677
Gso8g2512 304 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 15 299 - -
Gso8g2512 304 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 15 299 - -
Gso8g2512 304 ProSiteProfiles 'Homeobox' domain profile. 26 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2512 Gso-Chr8 42335344 42337079 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2512 16 290 Homeobox Transcription Factor Family AT4G03250 49.281 1.73e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso8g2512 Homeodomain 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2512 - - gsj:114424197 599.742