Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2509 ATGGAAGAAGTAACTGAGTTGCAGTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCAGCCCAGCTTAAGGCCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATTCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTCACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATAACCTATGGACACAAAAACCATCGTTATGTAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCATCTTTGCAAGATCGATTGCTTTGTCAAGGACAGGATCCGTATGATATGGAGCCTTCTAGTCATGTAACACCTAATGGATCTCTTCTGCCTCCCAATACCAAGGGTGCAAATAACATGGGACATAAACCATCAGGATATTTGAAAGTGAAGGGAGAGATAGAGCATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGATGGTCCACTACTTAGTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGTCAAATTGCAGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCAGTGAAAAAACAGTCCAGTCTCAGTTCTAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACAAATGGTCAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCCACCATGATATAAATCAAAGGAGAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTGCCTGGATTTCAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACACTAAAAATTGTAGAAAGGGTACTAAGCATGGTTTTGATGGGACGAGATATGACTCTGGTTCTAACCCCAGTGATCACTATGAAGAGAATAACCTTGTGGTTAACCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAACCTGAAGAATGTACAAAGGGGTGAATATGTGAAATCTAAACCTTCAAATTCAGTACATAAGTCTCAAGTTTACTTGGATACTGGAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGATAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGTGCTTACAAATGAAATGACGGTTGCAAAGTGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGGTTGAGCGTCAATCCAACACAAGAGGGAGATTGGCGTTCAATGTGTATTGGATTGCGTGATTTGGCTTTTCCAAACACACTATCAATTATTGCAGTGCCTCTGGCATCTTGGTTTGGTTCAATTGGATCCTTTGTTGGAGTAGTTACCCACTTATGCTTTTAG 1674 0.3913 MEEVTELQSEENKLSMEKNKKRRLKTPAQLKALEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRQDRSSGVIQDRGSGLVQDSCGSTKHVHYRYLDPKEVESHGLYNHGFSAADITYGHKNHRYVENDSATDNTSSESSSSLQDRLLCQGQDPYDMEPSSHVTPNGSLLPPNTKGANNMGHKPSGYLKVKGEIEHAAITAVKKQLGKHYREDGPLLSVEFDTIPPEAFECQIADLANEAYYAANPALPNSPEVSAVKKQSSLSSRYDSYFTKISSQDSQMVRGDFGSLHDSDFQDKKSHHDINQRRNFQSFTNPLPHKNSCLDFNADSTGEASAYNNTKNCRKGTKHGFDGTRYDSGSNPSDHYEENNLVVNQTDSLLHGYENSNLKNVQRGEYVKSKPSNSVHKSQVYLDTGERRGLNKRMAKEEKFDGDRKIKKQYRDPDEVRVLTNEMTVAKWAKVDPLEQYDVKQSSVAELEPRKSQRLSVNPTQEGDWRSMCIGLRDLAFPNTLSIIAVPLASWFGSIGSFVGVVTHLCF* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2509 557 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Gso8g2509 557 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 503 - -
Gso8g2509 557 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 503 - -
Gso8g2509 557 SMART HOX_1 18 80 IPR001356 GO:0003677
Gso8g2509 557 MobiDBLite consensus disorder prediction 7 23 - -
Gso8g2509 557 MobiDBLite consensus disorder prediction 172 207 - -
Gso8g2509 557 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Gso8g2509 557 CDD homeodomain 20 76 IPR001356 GO:0003677
Gso8g2509 557 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Gso8g2509 557 Gene3D - 8 91 - -
Gso8g2509 557 MobiDBLite consensus disorder prediction 1 23 - -
Gso8g2509 557 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2509 Gso-Chr8 42285357 42290866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2509 6 503 Homeobox Transcription Factor Family AT4G03250 38.132 1.24e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso8g2509 Homeodomain 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2509 - - gsj:114423292 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2509 8 42285357 42290866 Gso14g0294 14 2588116 2596231 PCT
Gso8g2509 8 42285357 42290866 Gso2g2382 2 48409359 48414992 PCT
Gso14g0294 14 2588116 2596231 Gso8g2509 8 42285357 42290866 PCT
Gso2g2382 2 48409359 48414992 Gso8g2509 8 42285357 42290866 PCT