Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2505 ATGACACAGCAATCATGTTCCTCTTCTTCCACATGTGAGTGGACTTATGATGTGTTCCTCAGTTTCAGAGGCGATGATACTCGAAGTGGTTTCACTGGAAGCCTTTACAAGTCTCTTTGTGACCAGGGAATCCACACCTTCATGGATGATGAGGGGCTCAGAAGAGGGGAAGAGATTAGACATGCTCTTTTCAAGGCAATTCAGCAGTCAAGAATTGCCATTGTTGTTTTCTCTGAAAACTATGCTTCCTCAACTTACTGTCTTGAAGAGCTTGTCATGATCCTTGAGTGCATAATGAAGAAGGGTCGCTTGGTTTGGCCGGTTTTTTACGGGGTGACTCCGTCTTATGTGCGACATCAGAAAGGTTCTTATGGGAAAGCATTGGACAAGCTTGGAGAAAGATTTAAGAATGATAAGGAGAAGCTGCAAAAGTGGAAGCTTGCTCTTCAAGAAGCAGCTAATTTGTCTGGTTCACATTTCAAACTCAAACATGGGTATGAACATGAAGTTATTCAGAAAATTGTTGAAGAGGTGTCCAGAAAGATAAATCGTAGCCCTTTACATGTGGCTAATTATCCAATTGGATTGGAGTCTAGAGTGCAAGAGGTGAACTCACTTTTGGATGTTGGATCCAATCAAGGAGTAAGCATGGTAGGGATTTATGGAATTGGGGGAATAGGGAAGACCGCTATTGCTTGTGCAGTGTACAATTTGATTGCTGATCAATTTGAAGGTCAGTGTTTCCTTGGTGATATCAGAGAAAAATCAAAGCATGGCTTAGTAGAGCTTCAGGAAACAATACTTTCTGAAATGGTTGGGGAGAAGAGTATCAAGTTGGGGAGTACTAATAGGGGGAAGGCAGTATTGAAAAGCAAGCTTCAACGAAAGAAAGTTCTTTTGATTCTTGATGATGTTGATAGATTAGAGCAATTAAAGGCACTTGCTGGTGATCCTTCCTGGTTTGGTCATGGCAGCAGAATCATTGTCACGACAACGGATAAGCATTTGTTACGTGTACATGGTGTTGAAAGAAGGTACGAAGCAAAAGGATTGGATGATAAAGAAGCTCTTGAGTTGTTTAGTTGGCATGCTTTTAAAAGCAATGAGGTTAGTCCAAGTTACATGGATATCTCTAAGCGTGCAGTACTTTATTCCAATGGCCTTCCATTGGCTTTGGAAATAATAGGTTCTAACTTAAATGGTAAAACAATGCCTGAATGGCAAGCAGCATTGGATACCATTGAAAGAAATCCAGATGAAGATATTCAGGAAAAACTAAAAGTTGGCTATGATGGTTTGAAAAGAAATGAGAAGGAAGTTTTCCTTGACATCGCTTGTTTCTTTAGAGGCTCCGATTTGAAAGATGTCACAAGTTTATTGTTCCAAGGTCGTGGTTTCTCTCCCGAGTATGTTATTCGAGTGTTGATCGATAAATCTCTCATAAAGATTGATAAATACGGTTTTGTGAGAATGCATAACTTGGTAGAGAACATGGGTAGAGAAATTGTTAAGCAGGAATCACCATCAGAACCTGGAAAACGCAGTAGATTATGGCTTTATGAGGATATTGTTGATGTTTTAGAAAATGACAAGGGAACTGATACAATTGAAGTAATCATGCTACACTCGCCAAAGAATAAAGAAGTACAATGGAATGGAAGTGAGCTCAAGAAGATGACAAACCTAAAATTACTATCTATTGAAAATGCTCACTTTTCTAGAGGCCCTGTGCATCTCCCAAATAGTTTGAGAGTACTAAAATGGTGGGGATATCCTTCACCGTCTTTGCCACCTGAATTTGATTCAAGGAGACTTGTTATGTTAGACTTGTCCAATAGTTGCAATATAATGGGCAAACAACTCAAATTCATGAAGTTCGAGTCTTTGAGCGAAATGGTTTTAAGAGGTTGCAGATTCATAAAACAAACACCTGACATGTCTGGAGCACAAAATTTAAAGAAGCTGTGTCTTGATAACTGCAAGAATTTAGTAGAAGTTCATGATTCAATCGGGCTTCTTGACAAAATTACATGGTTCACTGCTGTTGGATGCACCAATCTAAGGATTCTTCCCCGTAGCTTCAAGTTAACATCACTTGAACATCTGTCTTTCAAAAAATGCTCAAATCTCCAGTGTTTGCCAAATATATTAGAGGAAATGAAACATGTAAAAAAACTTGATCTGTGTGGAACTGCTATTGAAGAATTGCCATTTTCTTTTAGGAAACTTACAGGGCTTAAATATCTAGTGCTGGACAAGTGCAAGATGCTTAATCAGATCCCAATAAGCATTCTGATGTTACCGAAACTTGAGAAATTGACAGCCATAAAATGTGGACGGTATGCAAATTTGATCCTTGGTAAAAGTGAAGGACAAGTAAGATTGAGTTCATCTGAGTCTTTGAGAGATGTTAGATTAAACTACAATGATTTGGCACCTGCCAGCTTCCCCAATGTGGAATTTTTAGTGCTAACTGGCAGTGCTTTCAAAGTCCTTCCCCAATGCATCAGCCAATGTCGCTTTCTCAAGAATCTAGTTTTGGACAATTGCAAGGAGCTTCAAGAAATCAGAGGGGTTCCTCCAAAGATAAAATATCTCTCAGCAATAAACTGCACATCATTGTCTCATGAGTCTCAAAGCATGTTATTGAATCAGAGATTACACGAGGGTGGTGGCACAGATTTTTCCCTTCCAGGAACAAGGATACCGGAATGGTTCGACCATTGTACTACAGGACCATTGCTGTCTTTCTGGTTTCGTAACAAATTTCCAAGGATGGCTCTAGCTGTTGTTGGAGTTTTGGACAAGCAGGGAAGCTTTCCCATGTCAAGATTCCACTTGCTCATTAATGGCATTCAAAAGCTGCATTGCCTTTTCACCGCACAATCAAAACTAACCACGTATCATATATTCCTGTCCGATGTGCAGCTGAAATCCTACAATGGCGAATTGCAAAGTGTGTATGGGGAGGATGGGTGGAACCATGTTGAGATTTCATATGTGGGACCAAGTGCCTTTCCACATTCATGCAGAGCCAAGAGAGGAACCATCAAATTGATGGGGGTTCATGTTTACAAGCAAAAAACAAGCATGGAGGGTGTCCGGTTCACGAATCCTTGGTCTCCAAAGAGATCATACAGCGAAGTTTCCAAGCCTAGTTTGAAAGAAAATTTTCAGTCACTGGCCAAAAGAAGCCGTGGATCACAAGGCATGGAAATTTGTGAGGCACCACGCATGAAGCAGCATGAAGTGAATAGTGGTTATCACAGTGTATCACAGAGACTATGGTTAGAAATTTGCAGCATTGTAGCTCCTGCAGATGTTAAAGTCCTAATGTGGAGCATTTGCCAAAATGCTTTGCCAACTTTTGAATATCTTTTCAGGAGGAAGCTTGTAAATAGTCCACTCTGCCCCATTTGTGGAACAGAACCTGAAACCGTCGAACACGCGTTCCTGTTTTGTCCGTGGACACGACCCCTTTGGTTTGGAAGTGATTTCCAGTGGTGCATTGATGCCAAAACAGTTCAAAGCTTTCAACTTTGGCTTTGGCAGAAACTAGTGGAGATTCAAAGGGTATATCAAGAAAATGCCAACCAAGTATCTGCTCAGGTGGGAAGTATTTGTTGGGCTATTTGGAAAGGAAGGAATGAATTTATTCTTGAAGGAAAACCTGTCAATCCATTGATTTTAAGGTAA 3696 0.4034 MTQQSCSSSSTCEWTYDVFLSFRGDDTRSGFTGSLYKSLCDQGIHTFMDDEGLRRGEEIRHALFKAIQQSRIAIVVFSENYASSTYCLEELVMILECIMKKGRLVWPVFYGVTPSYVRHQKGSYGKALDKLGERFKNDKEKLQKWKLALQEAANLSGSHFKLKHGYEHEVIQKIVEEVSRKINRSPLHVANYPIGLESRVQEVNSLLDVGSNQGVSMVGIYGIGGIGKTAIACAVYNLIADQFEGQCFLGDIREKSKHGLVELQETILSEMVGEKSIKLGSTNRGKAVLKSKLQRKKVLLILDDVDRLEQLKALAGDPSWFGHGSRIIVTTTDKHLLRVHGVERRYEAKGLDDKEALELFSWHAFKSNEVSPSYMDISKRAVLYSNGLPLALEIIGSNLNGKTMPEWQAALDTIERNPDEDIQEKLKVGYDGLKRNEKEVFLDIACFFRGSDLKDVTSLLFQGRGFSPEYVIRVLIDKSLIKIDKYGFVRMHNLVENMGREIVKQESPSEPGKRSRLWLYEDIVDVLENDKGTDTIEVIMLHSPKNKEVQWNGSELKKMTNLKLLSIENAHFSRGPVHLPNSLRVLKWWGYPSPSLPPEFDSRRLVMLDLSNSCNIMGKQLKFMKFESLSEMVLRGCRFIKQTPDMSGAQNLKKLCLDNCKNLVEVHDSIGLLDKITWFTAVGCTNLRILPRSFKLTSLEHLSFKKCSNLQCLPNILEEMKHVKKLDLCGTAIEELPFSFRKLTGLKYLVLDKCKMLNQIPISILMLPKLEKLTAIKCGRYANLILGKSEGQVRLSSSESLRDVRLNYNDLAPASFPNVEFLVLTGSAFKVLPQCISQCRFLKNLVLDNCKELQEIRGVPPKIKYLSAINCTSLSHESQSMLLNQRLHEGGGTDFSLPGTRIPEWFDHCTTGPLLSFWFRNKFPRMALAVVGVLDKQGSFPMSRFHLLINGIQKLHCLFTAQSKLTTYHIFLSDVQLKSYNGELQSVYGEDGWNHVEISYVGPSAFPHSCRAKRGTIKLMGVHVYKQKTSMEGVRFTNPWSPKRSYSEVSKPSLKENFQSLAKRSRGSQGMEICEAPRMKQHEVNSGYHSVSQRLWLEICSIVAPADVKVLMWSICQNALPTFEYLFRRKLVNSPLCPICGTEPETVEHAFLFCPWTRPLWFGSDFQWCIDAKTVQSFQLWLWQKLVEIQRVYQENANQVSAQVGSICWAIWKGRNEFILEGKPVNPLILR* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2505 1231 Pfam NB-ARC domain 197 425 IPR002182 GO:0043531
Gso8g2505 1231 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 1000 IPR044974 GO:0006952
Gso8g2505 1231 SMART till_3 15 155 IPR000157 GO:0007165
Gso8g2505 1231 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Gso8g2505 1231 SUPERFAMILY L domain-like 538 882 - -
Gso8g2505 1231 Gene3D Ribonuclease Inhibitor 538 717 IPR032675 -
Gso8g2505 1231 Gene3D Ribonuclease Inhibitor 718 889 IPR032675 -
Gso8g2505 1231 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Gso8g2505 1231 Pfam TIR domain 16 185 IPR000157 GO:0007165
Gso8g2505 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 444 IPR027417 -
Gso8g2505 1231 Gene3D - 186 344 IPR027417 -
Gso8g2505 1231 Pfam zinc-binding in reverse transcriptase 1101 1161 IPR026960 -
Gso8g2505 1231 Gene3D - 350 434 IPR042197 -
Gso8g2505 1231 PANTHER ARCHAEAL ATPASE 26 1000 - -
Gso8g2505 1231 SUPERFAMILY "Winged helix" DNA-binding domain 421 528 IPR036390 -
Gso8g2505 1231 Gene3D - 10 185 IPR035897 -
Gso8g2505 1231 PRINTS Disease resistance protein signature 217 232 - -
Gso8g2505 1231 PRINTS Disease resistance protein signature 292 306 - -
Gso8g2505 1231 PRINTS Disease resistance protein signature 385 399 - -
Gso8g2505 1231 PRINTS Disease resistance protein signature 741 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2505 Gso-Chr8 42242196 42247614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2505 16 778 WRKY Transcription Factor Family AT4G12020 32.824 4.41e-90 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2505 - - gmx:100810811 2481.83