Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2504 ATGGAAGAGAGAAATGATAATGGTGAGAAACTAGATGAGGTTATGCTACCCGGTTTCAGGTTTCATCCAACTGATGAGGAGCTTGTTGGATTTTACCTTAAGAGAAAGATTCAGCAGAGGCCTCTCTCTATTGAGCTCATCAAGCAGCTTGATATCTACAAGTATGATCCTTGGGATCTTCCAAAAATGGCCACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCAAATAGGGTAACAGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATCGCCCTATCTATTCCTCGGAGGGTTCTAAGTGCATTGGTTTGAAGAAATCTCTAGTGTTCTACAAAGGAAGAGCTGCCAAAGGGATCAAAACTGATTGGATGATGCATGAGTTTAGACTACCATCTCTCACTCACCCACCCTCATCCCTCAAGAAGTTCATGGACAAGACTATTCCTGCTAACGAATCCTGGGCAATCTGCAGGATCTTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCACATTCTTGGGTCTCACCCTTACCTGAAACCACAACTACTAATTCTGATCATATGATAACTACTGATCATAGAGACATCAACCAATTTTGTCAAGCAAACATGCCATTCACAAAGAAAACTAGCTTAGCCAGCCAGTTTTGTACTTTCAATCACAATGACACACAACACTCATCAACTACTACTAGCACCACTCCTTGTCCTTTAGATGTTGTAGCCTCTTACAACAAACCACTTATGAATCCATTAATGCTTTACAAATCTTTAGATCGGTTACCCTTTTCAAATTATGGAGACCTTCTTACCAGTGGCTTGATATTCTCATCTCCTCTTGAAACTTCAACAACAACCAATGCTAAATCTTCAATGGATGCTTCTTCCTTGCTTTTGAGCACATCATCTTCTGTTCTTGGAGAATTTAGTAAGAACTCTGAGGGTATAATAACCACAAACTTTGGTGTGTTACAAGAGCATGGTAATGACTACCAAATACCATTACTACGTGACAACATGCAAGGGACATTTGGTAACCACGATGATAACAATGTGTTGGTAAAGATTCCTAATGTGAATGTGGTGCCTCGTGTTGGTGACCAACAATTGGAGACAGTGCGATCCATTGGGTTTCCATTCAATATTGGCGATGCATGGAAGCCAAATATGCTTTGGGATGCTTCATCTTTGTCCTTGTAA 1242 0.4163 MEERNDNGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTHPPSSLKKFMDKTIPANESWAICRIFKKTNATAQRALSHSWVSPLPETTTTNSDHMITTDHRDINQFCQANMPFTKKTSLASQFCTFNHNDTQHSSTTTSTTPCPLDVVASYNKPLMNPLMLYKSLDRLPFSNYGDLLTSGLIFSSPLETSTTTNAKSSMDASSLLLSTSSSVLGEFSKNSEGIITTNFGVLQEHGNDYQIPLLRDNMQGTFGNHDDNNVLVKIPNVNVVPRVGDQQLETVRSIGFPFNIGDAWKPNMLWDASSLSL* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2504 413 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Gso8g2504 413 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Gso8g2504 413 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 410 - -
Gso8g2504 413 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
Gso8g2504 413 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Gso8g2504 413 PANTHER PROTEIN FEZ ISOFORM X1 1 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2504 Gso-Chr8 42235778 42238760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2504 1 324 NAC Transcription Factor Family AT1G26870 58.084 8.98e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g2504 NAM 3.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2504 - - gmx:100810284 816.994