Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2489 ATGAAAACGGCTCCTGGCGAGAGAAACATCGAGCAGGCAATTACATCTCTTAAGAAAGGCTCATATCTGCTGAAGTACGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGACGAGTCTCTACTCTTATGGTACTCTGGCAAGGAAGAGAAACAGCTTAAGCTCAGTACGGTTTCAAGGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGGCCTGAAAAGGAATATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATATGTAAGGATAAAGATGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGAGGTAACAACTGCAAGTGGAGATTGGAATCAAGAACTGATGACAGTTTGTATTATGATAGTCCAAATTCTGGCACACGAAGATCCACTCCATCATTCTCTGACCCTGGAGATGCTGGCGGAGGTGCTTTTGATTTGCAAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCTTACACTGCAGCTAGTAAGAGTTCCAGCCAAGCTGAATCACTTGCAAATTCCTCTTTATCCTCTGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCATAGGTGATGTTTTTATTTGGGGAGAAGGTATCGCCGATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTATCTAGTTCTGAGATGGATGCATTCCTTCCCAAGGCACTAGAATCAAAGTTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTATAGTTACCAAGCAGGGAGATATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTTGAAATGGATGTTTTTCACCCGAAGCTCATTGACACTCTTGGTGGCGTGAATATCGAGTTAGTAGCATGTGGAGAATATCATACGTGCGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTACGCACAATTCTGGCATGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCCAAGAAAGTAAGTGGTAACTTGGAGGGTTTACGTGTATCATATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTGGGACATGGAGATCTTAGTAGCGCAAATATTCCTCGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGGTAAATGAATCTGTGGAATCTTCTACACGCTCATCTAATGGAAGACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGCTGATAGGGAACCTAGACTAGTTCCTGAGTGTGTAAATGCATTGAGTACTGAAAACATTTGCCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACGTCAGGACTTGTATATACAATGGGAAGTACAGCACATGGACAACTTGGCTGTCCTGCATCTGATGGGAAAGTCCCTACACGTGTTGGAGATAAAATTGCTGATAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAGTGATCACAGGAATAAACCTGCACTTGTTGAGTTCTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGTTGATCATTCTACTTGTGTTGGATGTCGCAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCATGCACCAGCAAGAAGTCTATAAAAGCTTCCCTTGCTCCCAGTTCCAACAAGCCGTATCGAGTCTGTGATGACTGTTATCTTAAACTTAAGAAAGCTGCCGCTGAATCAGTACCCTCGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGACAATAGAATCACTAAAGTACAGGGAACACTATTAAGGCTTGCATCTTTTGGCTCTATTATTCAAACAGAAAGTAGTCAATCAAAGCTTCCAGATTCACAAGATAGCCATCTTTTCCCAGCTTTAAATGGAAAACCACTGATGAGGGGTTTTGCTCCTTCAAAATCATCAAATTCTCTTTCTATTGATTCCAAGAAACACCTTTCAGTTTCTGAGCCTTCTGCAAGAATATCTTGTCAATCAACATCATCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAAGATATAAATGACCATTTAAAGCACAGAAATGATATTTTAAGTCAAGAAGTTATAAGTTTAAGGACACAGGTTGAAGACCTTACTCACAAGTCAAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGATCATAAAGTCATTGACTGCACAGTTGAAAGAAATGGTGGAAAGACTGCCAGAAGGACATAATACTGACTCCAGTACAGAGCCCTATGCTGAAAACAGTAGTAGTATTCTGCATCATTCCTTAGATGAGAGCCATATAAGAAACACGGTCATTCCCAAAAATGAAGGCAGCAGCAATGTATCAAATCTGATATTAGCTAATGGTGCCAAAACACAAAGTGTAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTATGTAAGTTTGTCCTCACAGCCAGGTGGTGGTAATGAGCTTAGGCGTGTTCGCTTCAGTCGAAGGCATTTCACAGAAGAACAAGCTGAAAAGTGGTGGGCTGAAAATGGAACGAAAATATTGGAGCGGCACAATATAGTTGCTTTATAG 3033 0.4174 MKTAPGERNIEQAITSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVTRGNNCKWRLESRTDDSLYYDSPNSGTRRSTPSFSDPGDAGGGAFDLQNRWVKAFSEIISYTAASKSSSQAESLANSSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDSIGDVFIWGEGIADGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVHSIGCGYRHAVIVTKQGDIFSWGEESGGRLGHGVEMDVFHPKLIDTLGGVNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGMLGHGNEVSHWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLSSANIPREVETLKGLRTTRVACGVWHTAAVVEVVNESVESSTRSSNGRLFTWGDGDKSQLGHADREPRLVPECVNALSTENICRVACGHSLTIALTTSGLVYTMGSTAHGQLGCPASDGKVPTRVGDKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDSDHRNKPALVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSTCVGCRNPFNFRRKRHNCYNCGLVFCKSCTSKKSIKASLAPSSNKPYRVCDDCYLKLKKAAAESVPSVQTPSLRSVSLQDNRITKVQGTLLRLASFGSIIQTESSQSKLPDSQDSHLFPALNGKPLMRGFAPSKSSNSLSIDSKKHLSVSEPSARISCQSTSSVSSKSSPRQSYEDINDHLKHRNDILSQEVISLRTQVEDLTHKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEIIKSLTAQLKEMVERLPEGHNTDSSTEPYAENSSSILHHSLDESHIRNTVIPKNEGSSNVSNLILANGAKTQSVKAEWVVQDEPGVYVSLSSQPGGGNELRRVRFSRRHFTEEQAEKWWAENGTKILERHNIVAL* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2489 1010 ProSiteProfiles BRX domain profile. 951 1006 IPR013591 -
Gso8g2489 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 299 IPR000408 -
Gso8g2489 1010 Pfam Transcription factor BRX N-terminal domain 865 893 IPR027988 -
Gso8g2489 1010 SMART fyve_4 624 695 IPR000306 GO:0046872
Gso8g2489 1010 SUPERFAMILY RCC1/BLIP-II 236 629 IPR009091 -
Gso8g2489 1010 Pfam Pleckstrin homology domain 11 117 IPR001849 -
Gso8g2489 1010 Coils Coil 870 890 - -
Gso8g2489 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 524 575 IPR000408 -
Gso8g2489 1010 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Gso8g2489 1010 PRINTS Chromosome condensation regulator RCC1 signature 352 368 IPR000408 -
Gso8g2489 1010 PRINTS Chromosome condensation regulator RCC1 signature 393 409 IPR000408 -
Gso8g2489 1010 PRINTS Chromosome condensation regulator RCC1 signature 409 423 IPR000408 -
Gso8g2489 1010 PRINTS Chromosome condensation regulator RCC1 signature 513 531 IPR000408 -
Gso8g2489 1010 PRINTS Chromosome condensation regulator RCC1 signature 571 592 IPR000408 -
Gso8g2489 1010 Gene3D - 363 461 IPR009091 -
Gso8g2489 1010 Gene3D - 169 362 IPR009091 -
Gso8g2489 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 300 351 IPR000408 -
Gso8g2489 1010 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 445 455 IPR000408 -
Gso8g2489 1010 MobiDBLite consensus disorder prediction 765 810 - -
Gso8g2489 1010 Pfam FYVE zinc finger 628 694 IPR000306 GO:0046872
Gso8g2489 1010 MobiDBLite consensus disorder prediction 767 808 - -
Gso8g2489 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 703 IPR013083 -
Gso8g2489 1010 SUPERFAMILY PH domain-like 10 117 - -
Gso8g2489 1010 SUPERFAMILY FYVE/PHD zinc finger 628 696 IPR011011 -
Gso8g2489 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 576 627 IPR000408 -
Gso8g2489 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 407 458 IPR000408 -
Gso8g2489 1010 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 632 694 IPR017455 -
Gso8g2489 1010 Gene3D - 9 125 IPR011993 -
Gso8g2489 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 472 523 IPR000408 -
Gso8g2489 1010 CDD PH_PLC_plant-like 8 118 - -
Gso8g2489 1010 Coils Coil 821 862 - -
Gso8g2489 1010 Gene3D - 464 635 IPR009091 -
Gso8g2489 1010 MobiDBLite consensus disorder prediction 136 151 - -
Gso8g2489 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 471 520 IPR000408 -
Gso8g2489 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 300 348 IPR000408 -
Gso8g2489 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 523 572 IPR000408 -
Gso8g2489 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 351 402 IPR000408 -
Gso8g2489 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 577 624 IPR000408 -
Gso8g2489 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 407 455 IPR000408 -
Gso8g2489 1010 Pfam Transcription factor regulating root and shoot growth via Pin3 950 1005 IPR013591 -
Gso8g2489 1010 MobiDBLite consensus disorder prediction 136 156 - -
Gso8g2489 1010 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1004 - -
Gso8g2489 1010 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1004 - -
Gso8g2489 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 352 406 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2489 Gso-Chr8 42050178 42061271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2489 867 1007 Major Intrinsic Protein MIP AT1G31880 30.168 5.10e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2489 - - pvu:PHAVU_003G066900g 1474.91