Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2484 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGATGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTACCATGGTGGAGGAGCATCCTTTCTTGGCAAGAGATCTATGTCATTTTCAGGGATTGAACTTGGAGAAGAAGCTAATGCTGAGGAAGATTCTGATGATGGATCTCAGGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTTGCAAGGGCTCTTGGATTGCAACCTAGACAGATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTATGATCTTCTCAAAAGACAATATGAAGCTATCAAAGCAGATAATGATGCACTTCAATTTCAGAACCAAAAACTTCAGACTGAGATATTGGCACTGAAAAGCAGAGAACCAACTGAATCCATCAACCTCAACAAAGAAACTGAGGGATCCAGCAGCAATAGAAGTGAGAACAGCTCAGAGATTAAGTTGGATATCTCAAGAACACCAGCTATTGATAGTCCTCTATCCACTCAGCAGAACAACAACAACAGAACACTCTTTCCATCTTCTGCTAGACCAACAGGAGTGGCTCAGCTTTTCCAAACCACTCCAAGGCCAGAGATTCAGTGCCAAAAGATTGATCACATGGTCAAAGAAGAGAGCCTAAGCAACATGTTCTGTGCCATTGATGATCAATCTGGCCTTTGGCCTTGGTTGGAGCAGCAACATTTCAATTGA 843 0.433 MAFFPANFMLQTPHQDDHQPPPSLNSIITSCAPQEYHGGGASFLGKRSMSFSGIELGEEANAEEDSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQFQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQNNNNRTLFPSSARPTGVAQLFQTTPRPEIQCQKIDHMVKEESLSNMFCAIDDQSGLWPWLEQQHFN* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2484 280 MobiDBLite consensus disorder prediction 1 25 - -
Gso8g2484 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 280 IPR045224 GO:0003700
Gso8g2484 280 MobiDBLite consensus disorder prediction 175 225 - -
Gso8g2484 280 MobiDBLite consensus disorder prediction 58 80 - -
Gso8g2484 280 MobiDBLite consensus disorder prediction 178 225 - -
Gso8g2484 280 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Gso8g2484 280 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Gso8g2484 280 Gene3D - 66 136 - -
Gso8g2484 280 CDD homeodomain 75 131 IPR001356 GO:0003677
Gso8g2484 280 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Gso8g2484 280 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Gso8g2484 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 280 - -
Gso8g2484 280 SMART HOX_1 73 134 IPR001356 GO:0003677
Gso8g2484 280 SUPERFAMILY Homeodomain-like 65 132 IPR009057 -
Gso8g2484 280 Coils Coil 122 170 - -
Gso8g2484 280 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Gso8g2484 280 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2484 Gso-Chr8 41907241 41909834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2484 1 280 Homeobox Transcription Factor Family AT1G69780 62.500 4.44e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso8g2484 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2484 K09338 - gmx:100790840 550.436