Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2483 ATGGTGCAAGATATGAAGCAGCAAGACAATGGAGAATCTAAGAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGAGAACAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCAAAGTTCAAAGATAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGCTCAAAAGGTATTTGGTAATAGATGGACAGAAATAGCAAAGGTGGTCTCAGGCAGAACGGATAATGCTGTGAAAAATCGTTTCTCCACACTCTGCAGGAAGAAACAGAAATATGCAGCTTTAGCAAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAGAGGATGATGCTCCAACATTGTAATAATATGGATACAACATCAGAATCTGGAGTACCTATTAAGAATTTGAGGAGGGCCGATATTGCTGATGATGCAGAAAAGATCAAATTTGAGGACCGATCACATTTACGAAATGGAACTCCAATAAATCAGCAGCCAAGAGCACCACTTGCAGTCTTAGCTCAAAACTGTCATAACTCAAACAACTTGACAGACCAGCATCATCTTTGCAATCCCAAGTTTAGCAGTTCCGCCCAAAATAACAAGATTCAAGGAACATTTCTCAAAAAAGATGACCCAAAGATAAGTGCATTGATGCAACAGGCGGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATACAGAGAATATGGACCAAAGTCTTGAAAACGCATGGAAGGTTCTTCAAGAGTTTCTGAACCGATCCAAAGAATCAGATATCCCTGGACAAAAGGTTCCAGATGTACGGCTTGTAGATCTTAAAGATATGATTGAGGAGTTGAAGAGTGGTAATGAGGAAGGCCGGGTTCTTCAAGAGCTTCTGAACCGAACCAAAGAATCAGATAGTACTGGGCATAAAATTCCAGATTTACGGCCTGCAGATTTTAAAGATATGGTTGAGGACTCAAAGAGTGGTAATGAGGAAGGCCAGGTACTTCAGGAGTTTCTGAACCGAACCAACAAATCAGATATCCCTGAACATAAGATTCCAAATTTACAGCTTGTAGATCTTAAAGATATGATTGAGGACTTGAAGAGTGGTAATGAGGAAGGCCAGGCTTGTTGGAGGAAAATGGACTGTTATGAAAACTCTCCAGGCAGTTCTGGATACAGTACAGGATCAATTCTCATCTGTCAGTCAGCTAGTGATAATTTGGAGCACTCATTGCATCAGGATATTGGAACCGAAATGAAGTCTAAACAACTTGAAGATGAAAAAGGAGTAAAAGTGGTTATGCCTACTGCAAATGTAGATCAAGATATGGTACCATGTTGTATGGAACAGATAAACAATGACGGGATTGTTTCTACCTCATCAAGATTGGAGTTCAGCTCCCCTCTTCAAGTAACCCCTCTGTTTAGATCTTTGGCGGCAGGAATTCCAAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAATGGAATCTCCATCCATCAACCCAAGTGCCAACTCATCACAACCGCCACCCTGCAAAAGAGCCCTACTACCTAGTCTATAA 1656 0.4046 MVQDMKQQDNGESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKVFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKQKYAALAKENSTSYINSNNKRMMLQHCNNMDTTSESGVPIKNLRRADIADDAEKIKFEDRSHLRNGTPINQQPRAPLAVLAQNCHNSNNLTDQHHLCNPKFSSSAQNNKIQGTFLKKDDPKISALMQQAELLSSLALKVDTENMDQSLENAWKVLQEFLNRSKESDIPGQKVPDVRLVDLKDMIEELKSGNEEGRVLQELLNRTKESDSTGHKIPDLRPADFKDMVEDSKSGNEEGQVLQEFLNRTNKSDIPEHKIPNLQLVDLKDMIEDLKSGNEEGQACWRKMDCYENSPGSSGYSTGSILICQSASDNLEHSLHQDIGTEMKSKQLEDEKGVKVVMPTANVDQDMVPCCMEQINNDGIVSTSSRLEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLRKTLGMESPSINPSANSSQPPPCKRALLPSL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2483 551 CDD SANT 22 66 IPR001005 -
Gso8g2483 551 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gso8g2483 551 PANTHER TRANSCRIPTION FACTOR MYB88 376 548 - -
Gso8g2483 551 PANTHER TRANSCRIPTION FACTOR MYB88 6 314 - -
Gso8g2483 551 PANTHER MYB PROTEIN-RELATED 6 314 - -
Gso8g2483 551 PANTHER MYB PROTEIN-RELATED 376 548 - -
Gso8g2483 551 ProSiteProfiles Myb-like domain profile. 23 66 IPR001005 -
Gso8g2483 551 SMART sant 19 68 IPR001005 -
Gso8g2483 551 SMART sant 71 119 IPR001005 -
Gso8g2483 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 70 IPR017930 -
Gso8g2483 551 MobiDBLite consensus disorder prediction 526 543 - -
Gso8g2483 551 SUPERFAMILY Homeodomain-like 19 113 IPR009057 -
Gso8g2483 551 CDD SANT 75 116 IPR001005 -
Gso8g2483 551 Gene3D - 73 148 - -
Gso8g2483 551 MobiDBLite consensus disorder prediction 526 551 - -
Gso8g2483 551 Pfam Myb-like DNA-binding domain 23 83 - -
Gso8g2483 551 Gene3D - 12 71 - -
Gso8g2483 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2483 Gso-Chr8 41858361 41865134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2483 357 403 MYB Transcription Factor Family AT2G02820 44.898 1.48e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso8g2483 Myb_DNA-bind_6 1.9e-14 CL0123