Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2482 ATGGGTAACTGCCTAGATTCTTCAGCCAAAGTAGAAGCTGCTCACAGTTCCAGAACCCCTTCTGGAATTTCAAAAACTAGTCCTTCATCTGTTCCTTCCAACTTATCTATTCTGTCATATAGTGAAGCAAGTGATTTCTCAAATCTTCCAACACCAAGGTCTGAGGGCGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTACCTTCAATGAGCTAAAGAATGCCACCAGGAACTTTCGCCCGGACAGTCTTCTTGGTGAAGGGGGATTTGGTTATGTTTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAGAAACTCAAACCTGAAGGGTTACAAGGTCATAAGGAGTGGTTGACTGAAGTGGACTACCTTGGACAACTACACCATCAGAATCTGGTAAAATTGATTGGATACTGTGCAGATGGAGAGAACCGGTTGTTGGTATACGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCTCTTTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCTAGAGGACTTTCTTTTCTTCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAAGCATCCAATATCCTACTAGACGCAGAGTTCAATGCTAAGCTCTCTGATTTTGGCTTAGCAAAGGCTGGGCCTACGGGTGATAGAACTCATGTCTCCACTCAAGTCATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACGGCTAAAAGTGATGTATACAGCTTTGGAGTTGTGTTGCTTGAACTATTGTCCGGTAGACGAGCCGTTGACAGATCAAAAGCCGGTGTAGAGCAGAATCTAGTAGAATGGGCAAAACCATATTTGGGTGACAAAAGAAGACTATTTCGGATCATGGACACCAAATTGGGAGGCCAATACCCACAAAAAGGAGCCTATATGGCGGCCACTCTTGCTCTAAAATGCCTTAATCGTGAAGCCAAGGGAAGGCCTCCGATTACAGAGGTTTTACAAACTCTTGAACAGATTGCAGCCTCAAAAACTGCAGGAAGAAACTCCCAATTAGAACAAAAGAGAGTCCATGCTCCTGTCAGAAAGTCTAGTGTGCAAAAGGGGTCCCATTTGAATCATACTCCTACTGCATTCCCATAA 1209 0.4376 MGNCLDSSAKVEAAHSSRTPSGISKTSPSSVPSNLSILSYSEASDFSNLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCADGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRSKAGVEQNLVEWAKPYLGDKRRLFRIMDTKLGGQYPQKGAYMAATLALKCLNREAKGRPPITEVLQTLEQIAASKTAGRNSQLEQKRVHAPVRKSSVQKGSHLNHTPTAFP* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2482 402 CDD STKc_IRAK 85 362 - -
Gso8g2482 402 MobiDBLite consensus disorder prediction 366 402 - -
Gso8g2482 402 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Gso8g2482 402 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 11 402 - -
Gso8g2482 402 SUPERFAMILY Protein kinase-like (PK-like) 54 359 IPR011009 -
Gso8g2482 402 MobiDBLite consensus disorder prediction 388 402 - -
Gso8g2482 402 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Gso8g2482 402 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2482 402 MobiDBLite consensus disorder prediction 1 33 - -
Gso8g2482 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gso8g2482 402 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Gso8g2482 402 Gene3D Transferase(Phosphotransferase) domain 1 165 387 - -
Gso8g2482 402 MobiDBLite consensus disorder prediction 10 33 - -
Gso8g2482 402 PANTHER OS01G0588500 PROTEIN-RELATED 11 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2482 Gso-Chr8 41813083 41816352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2482 55 359 Glycoside Hydrolase AT3G07070 53.896 5.78e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso8g2482 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2482 - - gmx:100305401 803.127