Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso8g2479 | ATGGGAAGACAAAGTCCTGGAAAATGGATCAGAAACTTACTTCTGGGGAAGAAATCATCATCGAAGTCCAAGTCTTCTAGAGAGAAAGATATTAATAAACCTTCAAGTTACAAGGATGTTCTGGTGGCGTCTTCCGAGGCATCAATGTCTGCTCTAACATCCGGAGCTAATGCTACTAAAGGAGTGCTATCAGAAAAGGAAGTAGTAAGCATATCATCAAATGATGGTGTAAATCTTTCAATTAGAGACAAACAGGACAATGCACAATCACTTGCTAATATTGGTTCTGGGGACCATCATGAGAAAATCAGGCAAATAGAAGCAGCTATAATAGTTCAGGCTGCTATTAGAGGCTATGAGGCGCGTGGGACATTTAAAACTCTCAAAGGTATCATACCTCTGCAATCTTATATTCGTGGCCAGTTGGTTCGACGACAAGCTATTTCTGCTTTATATTGTGTGAAGTCAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAAGGTTAGGCACTCAGATATTGGCCTTGCAGTCCAGAAATTTTTTAAGGATACTAAATTTCCGAATTCTGTTGGAGTAGATGCAACCACACAGGCAGCGAAGCTCTCAGATAATATCTTTGTTAACAAGCTTCTGGCTTCATCATCCTCTGCTGTTTCTCCAAATCTCAAATATAATGCTGGTGAACCTAACTTGGCTTGGGAGTGGCTCGAACGTTGGACAAAATCACACTTTTGGGTACCTCTTCGAGAAGTGCTGAAACCTGATTCAATATCTGATAAGAAAAATGGAAGTTGTCAAACAGTTGAAACTAGCAAGCGACAAGTTAAAAGAAATGCCAGGAAAGCACCTGCTGTGAGGGCTGGTGATGATTCAGTTTCAGATTCTAACAAACATAAACGGTATCCCAAAAAGGATTCAAACCTCCCATTGCATTCAGCTAAGGAACACCCACAAAAGGAAATTGAGAAAAAGAGTCCTAGAAAAACTCAAATTCAGAATGTTTTTGATAAATCTGAGGTTGCTCATGAGAAAAGAATTAACATCACAAGAATAGTTTCTGATCATGCAACAGTGAATGATGTTCAAGAGGAAGATGCTGATGCTCCTTCAAAGAAGTTGGAAGACTCGGCAGTGTCAGAGTCAAAACAGTTTGATGTTGAGAAAAGTCTAGGACAGCAAGCTGAAGAGAATGAAAATAATGAGTCATGTAATGATACTAATGCTCCCTTGCAATCTAGCTTGATGAATGGTAAAGATGGAGAATTCATTGAGGACTTGAATGATATAAATTCTAAGAATTTCCAGAGAAGAGCTTCCCTGCCTGCTAATTTTACAGATCATGAAAATCTGTTGCATAGTAACACTCCAAGACGGCCTAGTTATATGGCTCCAACTGAATCTACAAAAGCTAAGCTAAGAGGACATGGACAAGGCTCTCCAAGGTCTGTTAGCGATTTGGCAGATGTAAGTAGTGTCACCCGGCGGCTTTCACTTTCGTCTTCGCTTAATGGCAAGTATGGTTCATTCTCTCCGCGGTCAGATAGATTGTCTGCCTTGAGCAACAAGATAAGGACTGACAGATCTCTATCATCTTCAAGGGATGGCACAGATAAGTTGATGCAACCTAAGTGGAGAAGGTGA | 1644 | 0.4033 | MGRQSPGKWIRNLLLGKKSSSKSKSSREKDINKPSSYKDVLVASSEASMSALTSGANATKGVLSEKEVVSISSNDGVNLSIRDKQDNAQSLANIGSGDHHEKIRQIEAAIIVQAAIRGYEARGTFKTLKGIIPLQSYIRGQLVRRQAISALYCVKSIVKFQALARGYKVRHSDIGLAVQKFFKDTKFPNSVGVDATTQAAKLSDNIFVNKLLASSSSAVSPNLKYNAGEPNLAWEWLERWTKSHFWVPLREVLKPDSISDKKNGSCQTVETSKRQVKRNARKAPAVRAGDDSVSDSNKHKRYPKKDSNLPLHSAKEHPQKEIEKKSPRKTQIQNVFDKSEVAHEKRINITRIVSDHATVNDVQEEDADAPSKKLEDSAVSESKQFDVEKSLGQQAEENENNESCNDTNAPLQSSLMNGKDGEFIEDLNDINSKNFQRRASLPANFTDHENLLHSNTPRRPSYMAPTESTKAKLRGHGQGSPRSVSDLADVSSVTRRLSLSSSLNGKYGSFSPRSDRLSALSNKIRTDRSLSSSRDGTDKLMQPKWRR* | 548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 257 | 337 | - | - | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Gso8g2479 | 547 | ProSiteProfiles | IQ motif profile. | 105 | 129 | IPR000048 | GO:0005515 | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 360 | 383 | - | - | |
| Gso8g2479 | 547 | PANTHER | IQ CALMODULIN-BINDING MOTIF PROTEIN | 1 | 544 | - | - | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 360 | 419 | - | - | |
| Gso8g2479 | 547 | Pfam | IQ calmodulin-binding motif | 107 | 119 | IPR000048 | GO:0005515 | |
| Gso8g2479 | 547 | Pfam | IQ calmodulin-binding motif | 155 | 170 | IPR000048 | GO:0005515 | |
| Gso8g2479 | 547 | Pfam | IQ calmodulin-binding motif | 134 | 146 | IPR000048 | GO:0005515 | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 484 | 527 | - | - | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 446 | 547 | - | - | |
| Gso8g2479 | 547 | ProSiteProfiles | IQ motif profile. | 129 | 156 | IPR000048 | GO:0005515 | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 292 | 331 | - | - | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 446 | 463 | - | - | |
| Gso8g2479 | 547 | SMART | iq_5 | 127 | 148 | IPR000048 | GO:0005515 | |
| Gso8g2479 | 547 | SMART | iq_5 | 152 | 174 | IPR000048 | GO:0005515 | |
| Gso8g2479 | 547 | SMART | iq_5 | 104 | 126 | IPR000048 | GO:0005515 | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 528 | 547 | - | - | |
| Gso8g2479 | 547 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 544 | - | - | |
| Gso8g2479 | 547 | MobiDBLite | consensus disorder prediction | 396 | 415 | - | - | |
| Gso8g2479 | 547 | Pfam | Protein of unknown function (DUF4005) | 453 | 523 | IPR025064 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso8g2479 | Gso-Chr8 | 41696885 | 41702161 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso8g2479 | 1 | 547 | IQD Protein Family | AT1G14380 | 33.221 | 5.24e-62 | 212 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso8g2479 | - | - | gmx:100800688 | 1037.71 |