Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2475 ATGTTTTCCAACCAGGTTCACGTGTTCCGCTCTCCATTTCGCGTTCTGAAATATCCACGCACGAAAACCCCACCCAACACGCGTCTCTTCCTTCTTCTGCTTCATGCCAACAACAACAACAACACAAACGCTGGCACATCACCAACCTTCCTCTGTTCATCACTCAGTGATGACTCCTTTTCCACCCCAAAACCAAACCAGTTGGGTTACAATCCTTCAGAGGAACTGTTTGGTCTGGAGGAACTCAAGCCAAGCACGGCTAATTCTCATACACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGGGGAAGGGGTTATACCCCTTGTACAGGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATACTGACTTGCCACCAGTGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAACAACCATGGGAGAGGGCCCGTTCTATCTCCCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCTCCACCTCCAGAAGTTGGATTAAAGATCAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAACAGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATCAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCATACTTCCAAAATTATGAAAGCTTACTTTAGTGATCCAGTAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGTGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAATGATAGCTTGGTTGATCGGCGATTCACGTGTAGGCTCTGCGGGGGGAAAGGCCACAACAGAAGAACATGTAGAAAGTTAAAGATAAGCCTTAGCAATGGAAGAACAATAAAACACCATCAGTGCAAAATATGTCACCAATTCGGCCATAACCGCAGGACCTGCCCTCAAGCTGTTCCTTTTGCTGTTCCTAGTAAACGAAGGAACGCGGCCTCTCGAAGACCATACAAATGTAGGTTGTGTAAGAAGGAGGGGCATAATATTAGGACATGTCCAAGTAGGACAGTTGTTACTGAGAATCCTCAAGATTAA 1218 0.4524 MFSNQVHVFRSPFRVLKYPRTKTPPNTRLFLLLLHANNNNNTNAGTSPTFLCSSLSDDSFSTPKPNQLGYNPSEELFGLEELKPSTANSHTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTGTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEQPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTVAARKHTSKIMKAYFSDPVNRQKRSMAMKGVKFYCQNCGREGHRRHYCPELNDSLVDRRFTCRLCGGKGHNRRTCRKLKISLSNGRTIKHHQCKICHQFGHNRRTCPQAVPFAVPSKRRNAASRRPYKCRLCKKEGHNIRTCPSRTVVTENPQD* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2475 405 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 49 398 - -
Gso8g2475 405 Gene3D - 339 401 - -
Gso8g2475 405 Gene3D - 283 334 - -
Gso8g2475 405 ProSiteProfiles Zinc finger CCHC-type profile. 286 301 IPR001878 GO:0003676|GO:0008270
Gso8g2475 405 SUPERFAMILY Retrovirus zinc finger-like domains 336 396 IPR036875 GO:0003676|GO:0008270
Gso8g2475 405 SMART c2hcfinal6 312 328 IPR001878 GO:0003676|GO:0008270
Gso8g2475 405 SMART c2hcfinal6 343 359 IPR001878 GO:0003676|GO:0008270
Gso8g2475 405 SMART c2hcfinal6 285 301 IPR001878 GO:0003676|GO:0008270
Gso8g2475 405 SMART c2hcfinal6 379 395 IPR001878 GO:0003676|GO:0008270
Gso8g2475 405 Pfam Zinc knuckle 376 394 IPR025829 -
Gso8g2475 405 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 49 398 - -
Gso8g2475 405 SUPERFAMILY Retrovirus zinc finger-like domains 283 329 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2475 13 398 C2H2 Transcription Factor Family AT5G20220 59.649 1.34e-158 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2475 - - gmx:100800156 793.497