Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2474 ATGGAGCTTGCACCTGTGAAGTCTGAACTAAGTCCAAGGAGCCATAGGTTGCTCATGATAGATGGTAGTGAGGTTATTGGCACTAAGTGTGTCAAAAGGCGGCGAAGAGATTCATCTACGGCCGTGTTAGGTGGCAATGGACAACAAGGTGAACAGTTAGAAGAACAGAAGCAACTTGGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGGTTCAGGGGTGTTAGCAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGTATATTTGGGAGCTTATAATGATGAAGAAGCTGCAGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAATATCAACTTTCACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATATCTTGCTTCATTGAGAAGGAGGAGCAGTGGTTTTTCCAGAGGTGTATCGAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGTAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAAGCAGCTCGCGCATATGACATTGCAGCAATTGAATACAGAGGCATAAATGCAGTGACAAACTTTGACTTGAGCACCTACATAAGATGGCTAAGACCGGGAACACATCCTACTGCTTCTCATGATCAAAAGCCTAGCACTGATGCTCAACCTTTTGCAACCTCTAACTCCATGCAAGCAAGAGGGAACATTGAGGTATCCAACTCCAACAAGAATTCATTCCCCTCAGGTAAATTGGACAGTACCAAGAAGCGAGACTTTTCCAAGTACATGAACCCTTTGAGTCCATGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAGTGAAGAAGCTGAAGAAGTTGAATTGAAATATCCACATGAGGGCAATGATGGAGTTAGAGGGATTTATGATAATGACAACACCAATAACTCTTACTTTTGCTCTTCTAATATCAGCAGATTACCTAACTTGGAGTCATCAGAAGAGAGTCCATTGCCTATGTATCATGGAACTGTGCAATCACTATGGAATAGTGCTTTCAACATGTCTAACTGA 1224 0.4273 MELAPVKSELSPRSHRLLMIDGSEVIGTKCVKRRRRDSSTAVLGGNGQQGEQLEEQKQLGGQSTATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGISTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHPTASHDQKPSTDAQPFATSNSMQARGNIEVSNSNKNSFPSGKLDSTKKRDFSKYMNPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSSEEAEEVELKYPHEGNDGVRGIYDNDNTNNSYFCSSNISRLPNLESSEESPLPMYHGTVQSLWNSAFNMSN* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2474 407 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 PRINTS Ethylene responsive element binding protein signature 215 235 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 401 - -
Gso8g2474 407 ProSiteProfiles AP2/ERF domain profile. 175 233 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 MobiDBLite consensus disorder prediction 275 294 - -
Gso8g2474 407 Gene3D AP2/ERF domain 72 141 IPR036955 GO:0003700|GO:0006355
Gso8g2474 407 Gene3D AP2/ERF domain 174 235 IPR036955 GO:0003700|GO:0006355
Gso8g2474 407 Pfam AP2 domain 72 131 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 Pfam AP2 domain 174 225 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 SUPERFAMILY DNA-binding domain 174 235 IPR016177 GO:0003677
Gso8g2474 407 ProSiteProfiles AP2/ERF domain profile. 73 139 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 401 - -
Gso8g2474 407 CDD AP2 174 235 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 SMART rav1_2 73 145 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 SMART rav1_2 175 239 IPR001471 GO:0003700|GO:0006355
Gso8g2474 407 Coils Coil 326 346 - -
Gso8g2474 407 SUPERFAMILY DNA-binding domain 72 141 IPR016177 GO:0003677
Gso8g2474 407 MobiDBLite consensus disorder prediction 41 71 - -
Gso8g2474 407 MobiDBLite consensus disorder prediction 36 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2474 Gso-Chr8 41635384 41638259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2474 69 237 AP2-EREBP Transcription Factor Family AT5G57390 69.822 2.35e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso8g2474 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2474 - - gmx:100799621 789.26