Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2473 ATGGCGAACTGTCAGCAATATTATTTTCTTTTGCTTTCTCTGGCAATTTTTATTCCTACCCTGAATGCCAATTCCTTAGAGAAAGATGAGTATTGGCAGAGCCATGTCTATGAGTTTGATAGTTATTGGCAGGAAAGGGCAAAAGCCGCTAAAGTGGACAGTCAGGCAGCTTATTTTGAAGACCCATATTCAGTCTCCAGCAACTTCACTTCCAGTGTTAGCGAACTCACAATTGGCAAGAAGGATTTACGAAGGAACTTGAAGGGAAAATATCGTGGTGACGGTCCATGCATAGCCACAAACCCCATCGACAGGTGTTGGAGGTGTGACCCCAATTGGGCCAACAATCGCCAGAAGCTCGCAGATTGCGTCCAAGGCTTCGGTAGAAACACCGTTGGAGGCAAAGGTGGACCATTCTACGTGGTCACCGATCCCTCCGACGATGATATGGTGAACCCTAAACCCGGCACGCTCCGCCACGCGGTCACGCGTGACGGCCCGTTGTGGATCATCTTTGCTCGAAGCATGTTCATCACCCTCCAACAGGAGCTCATCATGAACAGCAACAAGACCATTGATGGAAGAGGTGTCGATGTTTACATTGCCAAGGGTGCTGGCATCACGGTGCAGTTTGTGAAGAACATCATCATCCATGGGATCAAGGTCTTTGACATCGTGATTCGTGAGGGTGGGATGATCAGAGATTCTGAGACACATTATGGTTTCAGGACTAAGAGTGATGGTGATGGCATTTCCATCTTTGGTAGCAGCAATGTTTGGATTGACCATGTTTCCATGAGAAATTGTAGTGATGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCCAACAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCCAGTGACAGTTATTCTGATGATAAGATCATGCAAATCACCTTGGCATTCAACCACTTCGGCAAAAGATTAGTTCAAAGGATGCCCAGAGTTCGATATGGTTTTGTCCATTCGGTAAATAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGTAGCAAGAACCCCACCATTATCAGTGAGGGTAACCGTTTTATTGCCCCTGACAACCAATTCGCTAAACAGATTACAAAGAGGGAATACGCACCAGAAAACGTATGGGCAAATTGGCAGTGGAGATCAATTAACGATGTGTACATGAATGGAGCATTTTTTGTGCAATCTGGGCCTGAGCTGGCTAGCAGACCATTCTCAAGAGAAGACATGATCACCGCTAAGGTAGGAAATTATGTAGGAAGGCTTACACGCTATTCTGGCAACCTGTTGAAGTGCAGAGTGGGTCGCCCTTGTTAA 1356 0.4624 MANCQQYYFLLLSLAIFIPTLNANSLEKDEYWQSHVYEFDSYWQERAKAAKVDSQAAYFEDPYSVSSNFTSSVSELTIGKKDLRRNLKGKYRGDGPCIATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPFYVVTDPSDDDMVNPKPGTLRHAVTRDGPLWIIFARSMFITLQQELIMNSNKTIDGRGVDVYIAKGAGITVQFVKNIIIHGIKVFDIVIREGGMIRDSETHYGFRTKSDGDGISIFGSSNVWIDHVSMRNCSDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDSYSDDKIMQITLAFNHFGKRLVQRMPRVRYGFVHSVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPDNQFAKQITKREYAPENVWANWQWRSINDVYMNGAFFVQSGPELASRPFSREDMITAKVGNYVGRLTRYSGNLLKCRVGRPC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2473 451 Pfam Pectate lyase 185 366 IPR002022 -
Gso8g2473 451 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Gso8g2473 451 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Gso8g2473 451 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Gso8g2473 451 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Gso8g2473 451 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Gso8g2473 451 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Gso8g2473 451 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Gso8g2473 451 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Gso8g2473 451 PANTHER PECTATE LYASE 3 451 - -
Gso8g2473 451 Pfam Pectate lyase, N terminus 35 87 IPR007524 GO:0030570
Gso8g2473 451 Gene3D - 100 443 IPR012334 -
Gso8g2473 451 SUPERFAMILY Pectin lyase-like 101 440 IPR011050 -
Gso8g2473 451 SMART amb_all 175 372 IPR002022 -
Gso8g2473 451 PANTHER PECTATE LYASE 18-RELATED 3 451 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2473 Gso-Chr8 41607315 41611276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2473 3 451 Polysaccharide Lyase AT1G14420 58.280 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2473 K01728 - gmx:100798579 926.006