Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2450 ATGGATCCGGGCGCGATGATGAACGAGGGTTCCTTCGCGAACAATGCGAGCGGTAATACGGCGCCGTTTAGCTTGGCGGAGATCTGGCAGCAGTTCCCGCCGGCGATTAGTGGCGGCGGTGGATTGGGGCTCAGAAGCCCGCAGTTCGGTCACGGGCCAGGAGGGCAGTTTGGGGATTTCACCACCGGGCCGAGCCACGGACTCGGACCCAGTAACAGCAGAAAGCGGCGCGACTCCGAGGAGGACGATTCCGCTAAGGGCGTGTCCACCAGCAATGCCGTGAATGAGGGTGATGGAAAACGTGTTAAAGGGAATAGGAACGAGGGTGGTGGTGATGGTGGTAATAATAAAGGTGAAGGTGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCTAAGCCAGCTTCGGAGCCTCCGAAGCAAGACTACATTCACGTTCGAGCCAGAAGGGGTCAAGCCACTGATAGTCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATTCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTTAACTCTGGTATTGAAGCGTTTCCTCCTAAAGATTTTGGTCAGCAAGCATTTGATCCTGCTGGCATACCATTCGGTTCGCAAGCTCCAAGAGAGTATAGCAGAGGTTCTTCACCAGACTGGTTACATATGCAGATAGGAGGTAGTTTTGAAAGAACAACGTAG 822 0.5061 MDPGAMMNEGSFANNASGNTAPFSLAEIWQQFPPAISGGGGLGLRSPQFGHGPGGQFGDFTTGPSHGLGPSNSRKRRDSEEDDSAKGVSTSNAVNEGDGKRVKGNRNEGGGDGGNNKGEGEVSSGKPAEQSAKPASEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQQAFDPAGIPFGSQAPREYSRGSSPDWLHMQIGGSFERTT* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2450 273 MobiDBLite consensus disorder prediction 33 143 - -
Gso8g2450 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 202 IPR011598 GO:0046983
Gso8g2450 273 PANTHER BNAC05G07950D PROTEIN 1 273 - -
Gso8g2450 273 MobiDBLite consensus disorder prediction 71 85 - -
Gso8g2450 273 CDD bHLH_AtBPE_like 142 227 - -
Gso8g2450 273 Coils Coil 199 219 - -
Gso8g2450 273 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
Gso8g2450 273 SMART finulus 158 208 IPR011598 GO:0046983
Gso8g2450 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 273 IPR024097 GO:0006355
Gso8g2450 273 Gene3D - 149 225 IPR036638 GO:0046983
Gso8g2450 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 219 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2450 Gso-Chr8 41206795 41209530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2450 1 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 55.755 2.18e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2450 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2450 - - gmx:100784478 523.472