Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2442 ATGACAGATAGTGCCTTAGCATATCTCACCACAGTCAAGGATGCATTTAAAGATGATAGAGAAAAATATGATAAATTTCTGGAACTCGTGAAAAATTTCACTGCTGAAAGATTCAACCTTGTTAGAGGCATAGAAGAAGTGAAGGAGCTGCTTAAAGGGTATAGAGATCTAATCTTGGGATTTAATGTTTTCTTGCCAAAGGGATATGAAATCAAACTTCCATTGGAGGATGAACAACCTCCAGAAAAGAAGCTTGATGTGTTTGTTAAAGCTAAAAAACTTCTGCACAAGATTAAGGCTCGATTCCATGGTCAAGATAATGTTTACAAGACATTTCTGGCCATATTAAAGATGCACAAAGATGGAACCAAGTCTCCCACTGCAGCTTACGGGGAGATTACTGCACTTCTTCAGCACCATGCGGATCTTCTTAATGAGTTACCTTTTTTATCTCTTAATACTTCAAGAACTATCTCAATTCATTTTACTTCTGCACAAAATTCTTTGTTTCGTGAAAAAAGCTCTGCAGTTCCAATAGTGCAACAAATGTGTGTTCTGAAGAGAAAAAGGACCAAAACTTCACATGATGATCACAACCACATTGTTGGTCATAGATTAGAGAGCGATTGGAGTGAACGGGAAAAGGATAATAGAGATTATTATCAAGATGGTATTCAGAAGCTTCTATCTCTGAAACGGACACATTTTTGTATGGCTGAAGACCTTATGGCTAGATCATTTTGTAATGTTGATAAACATTTTGGTATGCACCCCATGCCATCCACTTGTTATGATCAAAGTTCTATGAAAAGTAGTGAAAGGTTTTCTTTCTGTGCAAAAATCAAGGATAAATTACAAAATCCTAAGAATTACTTTTCAAAGCATGTGGATATCTACAGCAAGGAAAAAACTACTCGACAAGAATTGCCATCATCAACAACTGATTTCCCAAGAAAATTCCCAGATCTCATGAAGGGATTTAATGAATGTGTAACCCAATGTAAGAAGATGAATGAATCCTCGAGGGATGAAGAACATGTGCAGAAACAAATAAAGTTGGAAGACTGGAACAGAGATCGACATCATGATGGTGATGATCGGGTGAAAGAAACAGTTAGTGATTGCCGGAAAAGGGACAAATCTACTGTAGTTGCCAACAAGAATGTTTCTGGTCGTAAGTTGTCTCTATATGCCAGCAAGAAGAAGAATTCTGCAAAATCTGTTAGAGAGCTGGATCTATCTATCTGTGAAAAGTGCACTCCCAGTTACTATCTTCTACCAAAAGAATTTCAAATCCCATCTTCTAGCCGGAGAACAAAACTTGATGCAGAAGTATTGAATGACCATTGGAAATGTGTTGCTCCAAGTATTAAGGATTATTCTTCTAAACACATGAGCAAAAATCTTAATGAAATGACCTTGTTTGAATGTGAAGATGATAGGATTGAACTTGACATGTGTTTAGAAACTGCAAAGTCAACAACTAAGCAAGTTGAAGAGCTCATAGAAAAGATCAATACCAATATGATTGAAAGAGACAATCCAATTAACATTGAGAAGCACTTAATAGCTCAAAATCTTAGGTGCATTGAGCAGTTATATGGCGACCATGGGATTGATGTGCTGGATGTGTTAAGGAAGAATGCATCTCAAGTTTTGCCAGTCATTTTAACTAGGTTGAAGCAGAAACATGAAGAATGGGCAAGATGTCGTGCTGATTTAAATAAACTTTGGGCTGAAGTATATGCTAAAAACTATCATAAATCACTTAATCATGATCGTGTTCCTTCTACTAGGAACCAAGAGCTTTAG 1812 0.3664 MTDSALAYLTTVKDAFKDDREKYDKFLELVKNFTAERFNLVRGIEEVKELLKGYRDLILGFNVFLPKGYEIKLPLEDEQPPEKKLDVFVKAKKLLHKIKARFHGQDNVYKTFLAILKMHKDGTKSPTAAYGEITALLQHHADLLNELPFLSLNTSRTISIHFTSAQNSLFREKSSAVPIVQQMCVLKRKRTKTSHDDHNHIVGHRLESDWSEREKDNRDYYQDGIQKLLSLKRTHFCMAEDLMARSFCNVDKHFGMHPMPSTCYDQSSMKSSERFSFCAKIKDKLQNPKNYFSKHVDIYSKEKTTRQELPSSTTDFPRKFPDLMKGFNECVTQCKKMNESSRDEEHVQKQIKLEDWNRDRHHDGDDRVKETVSDCRKRDKSTVVANKNVSGRKLSLYASKKKNSAKSVRELDLSICEKCTPSYYLLPKEFQIPSSSRRTKLDAEVLNDHWKCVAPSIKDYSSKHMSKNLNEMTLFECEDDRIELDMCLETAKSTTKQVEELIEKINTNMIERDNPINIEKHLIAQNLRCIEQLYGDHGIDVLDVLRKNASQVLPVILTRLKQKHEEWARCRADLNKLWAEVYAKNYHKSLNHDRVPSTRNQEL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2442 603 ProSiteProfiles PAH domain profile. 83 154 IPR003822 GO:0006355
Gso8g2442 603 PANTHER SIN3A, ISOFORM G 2 597 - -
Gso8g2442 603 Coils Coil 488 508 - -
Gso8g2442 603 Gene3D Paired amphipathic helix 91 150 IPR036600 GO:0006355
Gso8g2442 603 Gene3D Paired amphipathic helix 4 66 IPR036600 GO:0006355
Gso8g2442 603 SMART hdac_interact2seq4b 415 515 IPR013194 -
Gso8g2442 603 ProSiteProfiles PAH domain profile. 1 68 IPR003822 GO:0006355
Gso8g2442 603 SUPERFAMILY PAH2 domain 2 67 IPR036600 GO:0006355
Gso8g2442 603 Pfam Paired amphipathic helix repeat 21 65 IPR003822 GO:0006355
Gso8g2442 603 SUPERFAMILY PAH2 domain 90 147 IPR036600 GO:0006355
Gso8g2442 603 PANTHER SIN3B-RELATED 2 597 IPR039774 GO:0003714
Gso8g2442 603 Gene3D Paired amphipathic helix 265 335 IPR036600 GO:0006355
Gso8g2442 603 Pfam Sin3 family co-repressor 417 509 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2442 Gso-Chr8 41085322 41090456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2442 2 80 WRKY Transcription Factor Family AT4G12020 44.304 4.52e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso8g2442 Sin3_corepress 5.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2442 K11644 - gmx:100782878 1227.62