Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2441 ATGAAGAGGTCCAGGGATGATTCTTACACGAGTTCACAACCCAAACGGCCCAAAGGGTCTTCTAGAGAGGAAGAACCCTCCGGGCAATCACAGATGACGACTGGTGATGGTCAGATACCAACCACCAAAGATGCCTTGGCGTTTCTCAAGGCAGTAGAGGACGCGTTTCAAGATAAGAGGGAAAAGTATGATTACTTTATGGTAATCATGAAGGATTTCAAGGCTCAAAGAATTGATACAATAGGTGTCATGGAAAGAGTGGAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGGTTTAACACCTTCTTGCCAAAGGGATATAAAATTATACTTCCATTGGAGGATGAGCAACCTCCCCAAAAGAAGCTCATTGAATTGAAAGAAGAAGCCATAAATTTTGTGGGCAAGATTAAGGCTCGTTTTCATGACAATGACCGTGTTTATAAGTCATTTCAAAACATATGTATGTGCAGAAAGGAAACCAAGTCTATCACTGAGATTTACCAGGAGGGCCATGCAGATCTTCTTGAGGAGTTTAATCATTTTCTTCCTGATATACCAGGAACTACCTCTACTCAGTACGCTTCTGTTCAAAATTCTCTCCTTCATGATAGGAGCTCTGCCATGCCAACAATTAGGCAAATGCATGTTGAAAAGAGAGAAAGGAACATAGCTTCACATGGGGATCATGACCTCAGTGCTGACCATCCTGATCCAGAACTTGACAGTTGTTTGATGATGGCTGATAAGGATCAGAGGAGGCGTGGTGCAAAGGAAAATGACTGTAGAAAAGGGAGAGACAGAAGAGAACAGGAAAGGGATGATGGGGATTATGATCATGATGGTAGTAGGGAGCATTTATCTCACAAACGGAAATCTGGTTGCAGGGCTGAAGACTCTGGTGCTGAAAGCATGCACCCTATCTCATATGCTTGTGAGGATATAAGTTCTTTGAAAAGTATGTGTAGTCCAGTGTTTGGTTACCTTGAAAAAGTCAAGGAGAAATTACAAAATCCTGAGGTTTTCCAGGAATTTTTGAAGTACCTATATATCTACAGCATGGAAATAATTACCAGACAAGAATTGCAATCATTGGTGGGCAATATACTGGGAAAATATGCAGATCTTATAGAGGGATTTGATGAATTCTTGGATCAATGTGAGAAAAATGAGATCTTTTGGCATGAAGGACATGGACCTAAACCAATGAAAGTAGAGGACAGGGATCAGGATAGGGATGACAAGATGGAAAAAAGGGATCGCAAATGCCTAGAAAGGGTCAAGTCCAATGCAACTGCTAACAAGGATGTTTCAGTTCCTAAGATGTCTCTGTATGCCAGCAAGGATAAGTATGCAATGAAGCCTATAAATGAGCTGGACCTTTCTAACTGTGAACAATGCACTCCTAGTTACCGTCTTCTACCAAAACAATACCCAATACTGCCAGCTAGCGACAGAACAGAACTTGATGCAGAGGTATTGAATGATAACTGGGTTTCTGTTACTTCTGGCAGTGAGGACTATTCATTTAAGCACAGGTACAAAAACCAATATGAGGATAGCATGTTTAGATGTGAAGATGACAGGTATGAACTTGATATGCTGTTAGAGTCTGTAAATGCGACAACTAAGCAAGTTGAAGATTTCTTAGAAAAGATTAATGCTAATATAATTAAAGGATACTGTCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGATGCATCGAACAAATATATGGTGATCATGGGCTTGATGTAGTGGATGCGCTAAAGAAGAATGCACCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGAGCCGTGCTGATTTTAATAAAGTTTGGTCTGAAACATATGCAAAGTACCATCACAAATCACTTGATCAATGTAATGGTACTGCAATTGCCAAGGGTCATGGTGGCCATCATGTTGGATTTACCATAATGAATCCTAAGAATTTCAACAACAATACAAATGGAAATGAGAGTGTTCTATTAGAAGAATCAAATTCCTGCAAACAACGGCAAACAATTGGGGATAATAAGGTTGAAGAGGATAATTCTCTTGATTCAGACTGCTCTGCACATAAAACTGAGACTGAAACCTTTGGAAGTAGTACACAGCATGGTCAAATGCATTTAATTGCAACCAATCTTGATGAAATATCAAGAGCCAAAAAGCAAGATCATTCAATTGATCGGTTGGTGAATGCTAATGTCTCAATGTCCTCTGGTATGGAGCAAAGTAATAGAAGAACGAATGTGGGTAATGCATCAGGACTTACTGCTACTCCTCCATCAAGACCTGGTAATGTTTCTAATGAGGGAGGGCTTGATTTACCTTCATTGGAGGAGACATTGTCACAATCTGTCTCGCAAGAGGAAGTTGCTGATCATGACCACAATGATATCCTTGGTAGAACCTTGAATGTCCCTAAACACTTAGGCCGTGACAGGGGATTGGGATTTGAAGTGACACAGAAGATTAATGTCTCACTCCAACAAATGCCACTATCTATTACAAATGGGCATGTGCAACAAATCCAGAAGGGCTTGGTTGACCTCAAAAAGGGAACGAACAAGTTGGAAATGGAAGTGCAAATGCAAATGAATAAGGAGCCACAGGAAGAAGGTCTGGGTGGCCTAAGTGGTATAAATAGTTGCACACCTACAGCTACTCATATACCAGAGCAAAATTTTAGACACCTATAG 2751 0.4057 MKRSRDDSYTSSQPKRPKGSSREEEPSGQSQMTTGDGQIPTTKDALAFLKAVEDAFQDKREKYDYFMVIMKDFKAQRIDTIGVMERVEELFKGHKDLILGFNTFLPKGYKIILPLEDEQPPQKKLIELKEEAINFVGKIKARFHDNDRVYKSFQNICMCRKETKSITEIYQEGHADLLEEFNHFLPDIPGTTSTQYASVQNSLLHDRSSAMPTIRQMHVEKRERNIASHGDHDLSADHPDPELDSCLMMADKDQRRRGAKENDCRKGRDRREQERDDGDYDHDGSREHLSHKRKSGCRAEDSGAESMHPISYACEDISSLKSMCSPVFGYLEKVKEKLQNPEVFQEFLKYLYIYSMEIITRQELQSLVGNILGKYADLIEGFDEFLDQCEKNEIFWHEGHGPKPMKVEDRDQDRDDKMEKRDRKCLERVKSNATANKDVSVPKMSLYASKDKYAMKPINELDLSNCEQCTPSYRLLPKQYPILPASDRTELDAEVLNDNWVSVTSGSEDYSFKHRYKNQYEDSMFRCEDDRYELDMLLESVNATTKQVEDFLEKINANIIKGYCPIRIEEHLTALNLRCIEQIYGDHGLDVVDALKKNAPLALPVILTRLKQKQDEWARSRADFNKVWSETYAKYHHKSLDQCNGTAIAKGHGGHHVGFTIMNPKNFNNNTNGNESVLLEESNSCKQRQTIGDNKVEEDNSLDSDCSAHKTETETFGSSTQHGQMHLIATNLDEISRAKKQDHSIDRLVNANVSMSSGMEQSNRRTNVGNASGLTATPPSRPGNVSNEGGLDLPSLEETLSQSVSQEEVADHDHNDILGRTLNVPKHLGRDRGLGFEVTQKINVSLQQMPLSITNGHVQQIQKGLVDLKKGTNKLEMEVQMQMNKEPQEEGLGGLSGINSCTPTATHIPEQNFRHL* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2441 916 Gene3D Paired amphipathic helix 128 188 IPR036600 GO:0006355
Gso8g2441 916 MobiDBLite consensus disorder prediction 400 422 - -
Gso8g2441 916 SUPERFAMILY PAH2 domain 326 390 IPR036600 GO:0006355
Gso8g2441 916 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Gso8g2441 916 SUPERFAMILY PAH2 domain 41 107 IPR036600 GO:0006355
Gso8g2441 916 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 642 - -
Gso8g2441 916 Pfam Sin3 family co-repressor 467 558 IPR013194 -
Gso8g2441 916 Gene3D Paired amphipathic helix 319 391 IPR036600 GO:0006355
Gso8g2441 916 ProSiteProfiles PAH domain profile. 124 188 IPR003822 GO:0006355
Gso8g2441 916 ProSiteProfiles PAH domain profile. 320 389 IPR003822 GO:0006355
Gso8g2441 916 MobiDBLite consensus disorder prediction 754 784 - -
Gso8g2441 916 MobiDBLite consensus disorder prediction 252 301 - -
Gso8g2441 916 MobiDBLite consensus disorder prediction 1 23 - -
Gso8g2441 916 SUPERFAMILY PAH2 domain 130 187 IPR036600 GO:0006355
Gso8g2441 916 MobiDBLite consensus disorder prediction 24 39 - -
Gso8g2441 916 Pfam Paired amphipathic helix repeat 342 386 IPR003822 GO:0006355
Gso8g2441 916 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Gso8g2441 916 ProSiteProfiles PAH domain profile. 39 108 IPR003822 GO:0006355
Gso8g2441 916 MobiDBLite consensus disorder prediction 252 303 - -
Gso8g2441 916 MobiDBLite consensus disorder prediction 692 710 - -
Gso8g2441 916 MobiDBLite consensus disorder prediction 754 793 - -
Gso8g2441 916 MobiDBLite consensus disorder prediction 1 39 - -
Gso8g2441 916 MobiDBLite consensus disorder prediction 692 724 - -
Gso8g2441 916 PANTHER SIN3B-RELATED 1 642 IPR039774 GO:0003714
Gso8g2441 916 SMART hdac_interact2seq4b 465 565 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2441 Gso-Chr8 41056324 41064685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2441 41 120 WRKY Transcription Factor Family AT4G12020 55.000 8.72e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso8g2441 Sin3_corepress 2.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2441 K11644 - gmx:106799801 1813.89