Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2440 ATGAAGAGGTCAAGGGATGATGTTTACATGAGTTCACAACTGAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGACGAGTGGCGGTGCTCAGAAACTAACCACAGATGATGCCTTGGCATATCTCAAGGCAGTAAAGGACATGTTTCAAGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACATCAGGTGTCATTGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCTCCCCAAAAGAAGCCCGTTGAATTTGCAGAAGCCATAAATTTTGTGGGCAAGATTAAGGCTCGTTTTCATGACAATGACCGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAGGGAAGCCAAGTCTATTGCTGAGGTTTACAAGGAGGTTGCTGCACTTTTCCAGGACCATGTGGATCTTCTTAGGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAACAGCCTCTAATCACTGTGGTTTGGCTCGAAATTCTCTCCTTCCCGATAGGAGCTCTGCTATGCCAATAATTAGGCAAATGCATGTTGAAAAGAGAGAAAGGAACATAGCTTCACATGGTGATCGTGACCTCAGTGCTGACCATCCTGATCCAGAACTTGACAGATGTTTGATTAGGGCCGATAAGGATCAGAGGAGGCATGATGAGAAGGAAAAGGGCAGTAGAGATTATGATCATGATGGTATATCTCGCAAGCGGAAATCTGGTATTAGGGCTGAAGACTCTGGTGCTGAACCATTGCATGATACTGATGAAAATTTTGGCATGCACCCTATCTCATATGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGCTTGGTTACCTTGACAAAGTGAAGGAGAAATTAAGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTAAATATCTACAGCAAGGAAATAATTGCCCGACATGAGTTGCAATCATTGGTGGGCAATTTACTGGGAAAACATGCAGATCTTATGGAGGGATTTGATGAATTTTTGGTTCAATGTGAGAAGAACGGATTCCTTGCTGGTCTCCTGAAAAAAAGACACGGACCAAAACCAGTGAAGGTAGAGGACAGGGATCGAGATCGTGATAGGGATGATGGGATGAAAGAAAGGGACCGCGAATGCCGAGAAAGGGACAAATCCAATGCAATTGCTAACAAGGATGTTTTGGTTCCTAAGACATCTCTGTACGCCGGCAAGGATAAGTATGCAGCGAAACCTATAAGTGAGCTTGATCTTTCGAACTGTGAACAATGCACTCCCAGTTACTGTCTTCTACCGAAAAATTACCCAATACCACCAGCTAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATCATTGGGTTTCTGTTACTTCTGGCAGTGAGGACTATTCCTTTAAACACATGCGCAAAAATCAGTATGAGGAGAGCTTATTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAAGAGCTCTTAGAAAAGGTTAATGCTAATATAATTAAAGGAGATAGTCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTTCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGTCTTACTTGCAGAAATAAAAGAAATTAGTGAGAAGAAAAGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCTATTATTCCTCACTTGGAATTTGTGTATCCTGATTCGGAGATTCATGAAGATTTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACCCCAAGGTCCAGAAGATACAGAAGATGTTGTCAAGGCTAATAAGAATAATTCTGCCAAAACTGGCACTGCAATTGATGATGGGGATAGTAGTCCTGCAACAAATCCTAAGAATTTAAACACTAATAGAAATGGGGATGAGAACTTTCCATCAGAACAATCAAATTCCTGCAAACAATGGCAAACAAGTGGGGATAATAAGGTTAAAGAAGATAATCATCTTGATTTAGAACGCTCGGCACATAAGAATGAAACCTTGGGAAGTAGTACACAGCATGGTAAAGTGCATATAAATGCATCCACGCCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGCTAATGTCTCATTGACCTTGGGTATGGAGCTAATTAGTAGAAGAACAAATGTGGATAATGCATCAGGACTTACTGCTACTCCATCAAGACCTGGTAATATTTCTGGTGAGGGAGGACTTGGTTTACCTTCATTAGAGGGTGCTGATTCTACAAGACCAGTTACATCCACAAATGGGGCCATCAATGAGGACACTAAAGTTCACAGATATCACGAAGAAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGTGGAGACTTTGAAGAGGATAACTGTGAAGTTTATGGACATGCTGGTTTGGAGGCAGTTCATAAAGGAAAAGATGGTACCATTTGTCGACAATACCAAAATAGACATGGGGAAGAAGTTCGTGGTGAAGCTGGAGGAGAAAATGATGCTGATGACGAAGGCGAAGAAAGTCCCCATAGATCAATGGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGTACTGAGTCTGCCGATGGTGAGGAGTGTTCTCGAGAACATGAGGAGAATGGAGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCAGAAGGAATGACTGATGCCAATGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCAGAGCGCTTTCTTGTCACTGTAAAGCCTCTGGCAAAACATGTTCCTCCAGTGTTGCATGACAAACAAAGGACTGTTCGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATCCAATCTGCAAAGGTTAATTCATCATCTGCTGAAAAGAAGTGGAGGGCTTCAAATGATACAGGCTCTAGTGATCAATATGGCAGGTTTATGGATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGAGTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAGGTTGTTGCCACCGAAGAGATGGATAACAAGCTGCTTCAACTATATGCATATGAAAATTCAAGAAAACCTGGAAGATTCGTTGATTTAGTTTATCACGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATGTTCTCCTGCACCTACCCAATTGTCGTCTATTCAACTGATGGACTATGGATATGATAAGCCTGAAATGACTGCAGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTGTTGTCCCTGACAAAAAGGAGAAGTCGGGAATTTACCTGAAGAGGAATAAGCGCAAGTATGCCATTAGTGATGAATATTCAAGCCAGACCTTGGATGGACTACAAATTATCAATGGTCTAGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCATACGTTTTAGATACTGAAGATTTTTTACATCAAACAAGAAGAAAAAGGAGAACCTTGTATCAGAGCAGTTCATGCCATGGACAGGAAAAGTCCCCAATCATTTGTTCAAGCAGAGCACAACGGTCCTGCAAATTATTTTCAATTTGA 4185 0.4045 MKRSRDDVYMSSQLKRPMVSSRGEPSGQPQMTSGGAQKLTTDDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTSGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAINFVGKIKARFHDNDRVYKSFLDILNMYRREAKSIAEVYKEVAALFQDHVDLLREFTHFLPDTSGTASNHCGLARNSLLPDRSSAMPIIRQMHVEKRERNIASHGDRDLSADHPDPELDRCLIRADKDQRRHDEKEKGSRDYDHDGISRKRKSGIRAEDSGAEPLHDTDENFGMHPISYACEDKSSLKSMYSPVLGYLDKVKEKLRNPEDYQEFLKCLNIYSKEIIARHELQSLVGNLLGKHADLMEGFDEFLVQCEKNGFLAGLLKKRHGPKPVKVEDRDRDRDRDDGMKERDRECRERDKSNAIANKDVLVPKTSLYAGKDKYAAKPISELDLSNCEQCTPSYCLLPKNYPIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKVNANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDSEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPMLGVPSRPQGPEDTEDVVKANKNNSAKTGTAIDDGDSSPATNPKNLNTNRNGDENFPSEQSNSCKQWQTSGDNKVKEDNHLDLERSAHKNETLGSSTQHGKVHINASTPDEVSRANKQDHSIERLVNANVSLTLGMELISRRTNVDNASGLTATPSRPGNISGEGGLGLPSLEGADSTRPVTSTNGAINEDTKVHRYHEEVGHFKSEREEGELSPNGGDFEEDNCEVYGHAGLEAVHKGKDGTICRQYQNRHGEEVRGEAGGENDADDEGEESPHRSMEDSENASENGDVSGTESADGEECSREHEENGDHEHDNKAESEGEAEGMTDANDVEGDGASLPYSERFLVTVKPLAKHVPPVLHDKQRTVRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAEKKWRASNDTGSSDQYGRFMDALYNLLDGSSDSTKFEDECRAIIGTQSYVLFTLDKLIYKLVKQLQVVATEEMDNKLLQLYAYENSRKPGRFVDLVYHENARVLLHDENIYRIECSPAPTQLSSIQLMDYGYDKPEMTAVSMDPNFSAYLHNDFLSVVPDKKEKSGIYLKRNKRKYAISDEYSSQTLDGLQIINGLECKIACSSSKVSYVLDTEDFLHQTRRKRRTLYQSSSCHGQEKSPIICSSRAQRSCKLFSI* 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2440 1394 SUPERFAMILY PAH2 domain 321 386 IPR036600 GO:0006355
Gso8g2440 1394 SMART hdac_interact2seq4b 467 567 IPR013194 -
Gso8g2440 1394 MobiDBLite consensus disorder prediction 14 36 - -
Gso8g2440 1394 MobiDBLite consensus disorder prediction 402 430 - -
Gso8g2440 1394 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1371 - -
Gso8g2440 1394 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Gso8g2440 1394 MobiDBLite consensus disorder prediction 828 857 - -
Gso8g2440 1394 MobiDBLite consensus disorder prediction 885 932 - -
Gso8g2440 1394 MobiDBLite consensus disorder prediction 828 850 - -
Gso8g2440 1394 Pfam Sin3 family co-repressor 469 559 IPR013194 -
Gso8g2440 1394 MobiDBLite consensus disorder prediction 1 36 - -
Gso8g2440 1394 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Gso8g2440 1394 MobiDBLite consensus disorder prediction 1034 1061 - -
Gso8g2440 1394 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Gso8g2440 1394 MobiDBLite consensus disorder prediction 233 299 - -
Gso8g2440 1394 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Gso8g2440 1394 MobiDBLite consensus disorder prediction 760 808 - -
Gso8g2440 1394 Coils Coil 536 556 - -
Gso8g2440 1394 MobiDBLite consensus disorder prediction 1007 1021 - -
Gso8g2440 1394 MobiDBLite consensus disorder prediction 990 1075 - -
Gso8g2440 1394 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Gso8g2440 1394 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Gso8g2440 1394 Gene3D Paired amphipathic helix 316 387 IPR036600 GO:0006355
Gso8g2440 1394 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Gso8g2440 1394 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Gso8g2440 1394 Pfam Paired amphipathic helix repeat 339 383 IPR003822 GO:0006355
Gso8g2440 1394 ProSiteProfiles PAH domain profile. 317 386 IPR003822 GO:0006355
Gso8g2440 1394 MobiDBLite consensus disorder prediction 914 928 - -
Gso8g2440 1394 Pfam C-terminal domain of Sin3a protein 1108 1355 IPR031693 -
Gso8g2440 1394 PANTHER SIN3B-RELATED 1 1371 IPR039774 GO:0003714
Gso8g2440 1394 MobiDBLite consensus disorder prediction 760 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2440 Gso-Chr8 41021344 41032817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2440 28 119 WRKY Transcription Factor Family AT4G12020 60.638 3.70e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso8g2440 Sin3a_C 2.8e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2440 K11644 - gmx:100781798 2745.3