Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2430 ATGATTGTGACTCGCTCTGCTTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCTCACTTCAGCCTTGCTCCCACCTTCCCTTCTCTATTCAAACCTCGCTTCTTCTCTATAACCACTCCACGCCAAGCACAAACCAGAACCTTTGTAAGCGCTGTTGCATCATCATCATCACAAGGTTCCAATGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCGTGGAGTTCACTCGGTCTTTCTGATACCATTTCTCGAGCACTCTCTAACATTGGCCTCAATAGACCCTCTCTCGTTCAGGCTTCTTCTGTACCGTCTGTGCTGTCAGGGAAGGATGTTATTATTGCCGCGGAGACTGGAAGTGGTAAGACATACAGTTACCTAGTTCCTCTGATTGATAAGCTTAGGGTCACCCAGGAGCGTTCTCTACTTGCTGTGTCGGATCGAGAAGTGACCTCGCTGCACAAAGTTTTGCTTGTTCTGTGTCCAAATGTGCAACTTTGTGAGCAGGTAGTGAGGATGGCTAATAGTCTCTGTAAAGATGACAGTGAGACGATAGTTAGTGCGGCAGCGATTTGTGGTAAACAGGGATGGCCGATTCGGGAACCTGATGTCATTGTGACGACACCTGCTGCTCTTCTGAATTATGTTGACCTTGACAGAACCCGCCGCGTTGAATTTATGCGAGGTGTTAAATATGTGGTGTTTGATGAAGCTGACTTGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCTTGATAAACTTGCTCCGCTTTGATGAAAAACTCTTGTCTCGATCAAAAAAATCAGTTGCAGAGTTTCCGATGAAACAGGAATCTTCCTTGTCATCAGAAGATGCTTTTGAAGGTGAAGAGAAACTTGAAACTGAAGCCATCTTGGAAGAGGATAACAATGATAAAGAGGATATTGCTGATATTAATAACGAAGCCGAAAATGTTAAACTAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGGGGTATTGAAATATATGTTTCCTGATGCTGAGTGGGTTTGCGGAGACTATCTTCATTGTCACAATCCGAGATTGGAGCAAAAATGGATAGAAGTTACGGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGATTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCATTCTGGGATTGAATGTTCACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAGACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGTACCGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGTGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTTGGACTTGTTACTAGCATGTACACTGAATCCAACAGGGAGCTTGTTAATGCTGTTCGTCGGGCAGGGGAACTTGATCAACCTGTGGTAAATTTTGAAACATTATTTAATATTTATTGGCCTTACTCGCTCGACACTCACAGGCAGGAAAGAAGAAAACATCCTTCCCTTCCCACTCCCAGGAAGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTGCTAACAAAGTCAGAGATTCAGCACCAATTAAAGAGAGCGTTCTAGGATGA 1833 0.4343 MIVTRSALMLHLQNPPIRYHFFSHFSLAPTFPSLFKPRFFSITTPRQAQTRTFVSAVASSSSQGSNGRDTFFAEENVSWSSLGLSDTISRALSNIGLNRPSLVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRVTQERSLLAVSDREVTSLHKVLLVLCPNVQLCEQVVRMANSLCKDDSETIVSAAAICGKQGWPIREPDVIVTTPAALLNYVDLDRTRRVEFMRGVKYVVFDEADLLLCGSFQNKVIRLINLLRFDEKLLSRSKKSVAEFPMKQESSLSSEDAFEGEEKLETEAILEEDNNDKEDIADINNEAENVKLRDWRRVRKNYERSKQYVFVAATLPVNGKKTAGGVLKYMFPDAEWVCGDYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHRFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLHSGIECSRYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQVDFATSAVDFLHRVGRTARAGQFGLVTSMYTESNRELVNAVRRAGELDQPVVNFETLFNIYWPYSLDTHRQERRKHPSLPTPRKETAFSRKRSFRNKLKKRGANKVRDSAPIKESVLG* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2430 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 525 IPR027417 -
Gso8g2430 610 Gene3D - 375 543 IPR027417 -
Gso8g2430 610 MobiDBLite consensus disorder prediction 563 584 - -
Gso8g2430 610 CDD DEADc 88 269 - -
Gso8g2430 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Gso8g2430 610 Pfam Helicase conserved C-terminal domain 420 513 IPR001650 -
Gso8g2430 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 368 IPR014001 -
Gso8g2430 610 SMART helicmild6 433 513 IPR001650 -
Gso8g2430 610 Pfam DEAD/DEAH box helicase 103 267 IPR011545 GO:0003676|GO:0005524
Gso8g2430 610 MobiDBLite consensus disorder prediction 563 610 - -
Gso8g2430 610 SMART ultradead3 96 387 IPR014001 -
Gso8g2430 610 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 45 541 - -
Gso8g2430 610 Gene3D - 39 365 IPR027417 -
Gso8g2430 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 541 - -
Gso8g2430 610 CDD SF2_C_DEAD 384 522 - -
Gso8g2430 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 550 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2430 Gso-Chr8 40857018 40877374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2430 328 540 Eukaryotic Initiation Factors Gene Family AT5G11200 28.279 1.22e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2430 - - gsj:114423204 1187.94