Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2416 ATGACTGTGGATGAAGTCGGTAGTAGCTCTGAGTGGAGCAAAGAACAGGATAAAGCATTTGAAAATGCCTTGGCAATTCATCCTGAGGATGCTTCAGACCGATGGGAGAAGATTGCGGCTGATGTACCGGGGAAAACCTTGGAAGAGATTAAACACCACTATGAGCTATTGGTTGAAGATGTTAACCAGATTGAATCTGGTTGTGTGCCTTTACCATCTTATAATTCTTCTCCAGAGGGCTCAACAAGCCATGCTAGTGATGAAGGAGCTGGCAAGAAGGGAGGCCACTCTTGGAATAGTAACAACGAATCTAATCATGGAACCAAGGCTTCAAGATCAGATCAGGAACGGCGAAAGGGTATTGCATGGACAGAGGATGAACACAGGTTATTCCTCCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGAAACTTTGTGGTGACAAGAACACCTACACAAGTAGCAAGCCACGCCCAAAAATACTTTATTCGCTTGAACTCCATGAATAAAGACAGAAGGCGATCCAGCATACACGATATCACCAGTGTCAACAATGGAGACGTTTCAGCACTTCAAGGACCAATTACTGGCCAAACAAATGGTTCTGCAGCGAATTGTGCCGGAAAATCAACCAAACCACCCCCTCCAACCCCAACTGCTGCCCCAGGTGTAGGAATATATGCTGCTCCTACCATTGGACAACCTATAGGTGGACCCCTTGTATCTGCTGTTGGCACCCCAGTGATGAACCTTCCTCCCCCGGCACACATAGCATATGGTCTTGGAGCACCAGTTCCCAGGGCAGTTGTTCCTGGAGCACCAATGAACTTAGGTCCTGTGCCATACCCTATGTCACATACATCTGCTCATAGATGA 891 0.468 MTVDEVGSSSEWSKEQDKAFENALAIHPEDASDRWEKIAADVPGKTLEEIKHHYELLVEDVNQIESGCVPLPSYNSSPEGSTSHASDEGAGKKGGHSWNSNNESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSALQGPITGQTNGSAANCAGKSTKPPPPTPTAAPGVGIYAAPTIGQPIGGPLVSAVGTPVMNLPPPAHIAYGLGAPVPRAVVPGAPMNLGPVPYPMSHTSAHR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2416 296 CDD SANT 11 58 IPR001005 -
Gso8g2416 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Gso8g2416 296 MobiDBLite consensus disorder prediction 204 224 - -
Gso8g2416 296 Gene3D - 4 71 - -
Gso8g2416 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Gso8g2416 296 PANTHER TRANSCRIPTION FACTOR KUA1 7 284 - -
Gso8g2416 296 SMART sant 8 60 IPR001005 -
Gso8g2416 296 SMART sant 119 169 IPR001005 -
Gso8g2416 296 Gene3D - 121 173 - -
Gso8g2416 296 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Gso8g2416 296 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Gso8g2416 296 MobiDBLite consensus disorder prediction 69 84 - -
Gso8g2416 296 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 284 - -
Gso8g2416 296 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Gso8g2416 296 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Gso8g2416 296 MobiDBLite consensus disorder prediction 69 119 - -
Gso8g2416 296 CDD SANT 122 167 IPR001005 -
Gso8g2416 296 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Gso8g2416 296 MobiDBLite consensus disorder prediction 10 34 - -
Gso8g2416 296 MobiDBLite consensus disorder prediction 1 34 - -
Gso8g2416 296 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Gso8g2416 296 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Gso8g2416 296 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2416 Gso-Chr8 40616129 40624788 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso8g2416 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2416 - - gmx:100820272 586.645