Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2411 ATGAATTGGGTTCACTCTCAAATCTGCCATAGTACTGATGCTATCAACAATCCCACTAGTATTTGTTCTTCTTCTTCTGAATCATTGCCTTATAGTTCTGCCTACAAGAAACAACTAGCCCCTCCTCCTCCTCTAGATTCTTCATCTGGCACTAGAATAAGCCCTGCAGTTGTTTTCATCTTTGTAATTCTAGCAATTGTGTTCTTCATCTCTGGCCTCCTTCACTTGCTAGTTAGATTCCTCATAAGGCACAGACCCTCTTCATCATCATCAATTTCCCAGTCCAATAGGTACCCTAATGACATGTCTGAATCTAACGATCCTTACCAGAGGCAATTACAACAGCTCTTCAATCTCCATGACTCCGGCCTAGATCAGGCCTTCATGGATGCCCTTCCAGTTTTCCTCTACAAAGACATCATAGGTTTGAAGGAGCCATTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCAGAACAAGACATGCTGAGGCTTCTGCCACTTTGCAACCATGCTTTCCACATTGATTGCATAGACACATGGCTGCTGTCAAATTCAACATGTCCTCTCTGTAGAGGGAGTCTTTATGATCCAGGCTTTGCCTTTGAAAACCCAGTTTATGACCTTGAGGGTGTGAGGGAAGAAGATGGGGTTTCAGGAAGTGTTGCTGGTGAGGGTAGTTGTGTTAATAAACATGCAGAAAACCACATAATGAGTGGGAAAAGGGTGTTTTCTGTAAGGCTAGGGAAGTTTAGAAGCTCAAATATTGTAGAAGGGGTGGAAAGATCAGGAGGTAGAGGTGAGAGTAGTACAAGTAATTTGGATGTTAGGAGATGCTACTCAATGGGGTCCTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGAGGTGATGGTGGAGGTGTTAATGGTGACAGTATGAGACAATTGAAAGGGAGATTGGTCAATTATGGAAATTCCTCCACTGATGATGTTGAGGGAAAAAAAATCAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCCAAGATCTGGCAATGGTCTAAGAAGGACAAGGTTTCAATTTCACAAGAAAACCATTTGGGTGGTTCTAATGTCACTGCAGCTTTGCCATGGATGCATAGAGCTCAAGGTGCATGA 1155 0.4294 MNWVHSQICHSTDAINNPTSICSSSSESLPYSSAYKKQLAPPPPLDSSSGTRISPAVVFIFVILAIVFFISGLLHLLVRFLIRHRPSSSSSISQSNRYPNDMSESNDPYQRQLQQLFNLHDSGLDQAFMDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYDPGFAFENPVYDLEGVREEDGVSGSVAGEGSCVNKHAENHIMSGKRVFSVRLGKFRSSNIVEGVERSGGRGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDGGGVNGDSMRQLKGRLVNYGNSSTDDVEGKKINIARKGESFSVSKIWQWSKKDKVSISQENHLGGSNVTAALPWMHRAQGA* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2411 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 196 IPR013083 -
Gso8g2411 384 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Gso8g2411 384 SMART ring_2 149 190 IPR001841 -
Gso8g2411 384 CDD RING-H2_PA-TM-RING 148 191 - -
Gso8g2411 384 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 376 - -
Gso8g2411 384 Pfam Ring finger domain 148 191 IPR001841 -
Gso8g2411 384 SUPERFAMILY RING/U-box 128 197 - -
Gso8g2411 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2411 Gso-Chr8 40504144 40505975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2411 47 357 C3H Transcription Factor Family AT2G18650 40.413 9.26e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2411 - - gmx:100818135 748.043