LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g2406	ATGGCTTCAAGATCATATGCTAATCTCTTTGACTTAGCTAGTGGAGACTTTCTTGATTTTCCTTGCCCCCCAAGAGCCCTTCCGAGGGTTATGACCGTTCCTGGAATTATTTCAGACCTGGATGGTTATGGCTGTAACGACGGGGATTCAGATGTTAGCTCTTCTGGATGTAGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCAGTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGGTCTTCAGTTGGGATGAGGATTCAATTTTATTACAATTAAAAGACGGTTTTTCTGCTGATACAGAGGTAATCTATGTGGGTTCTCTCAAGGTTGAAATAGATGCCTGTGAGCAGGATGCAGTTGCTCAGAGATTGCTGGATGAATTTAATTGTGTACCTACCTTTCTACCCCATGATCTCCAAAAAAGGTTCTACCTTGGATTTTGTAAGCAGCAACTTTGGCCTCTCTTTCATTATATGCTACCCATATGCCCAGATCACGGTGATCGCTTTGACCGTATACTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTCATGGAAGTAATTAATCCTGATGATGATTTTGTTTGGGTTCATGATTATCACTTAATGGTTTTGCCTACTTTCTTGAGGAAGCGATATAATCGGGTTAAACTTGGGTTTTTTCTGCATAGTCCTTTCCCTTCATCTGAAATCTACCGAACTTTACCAGTAAGGGATGAAATTTTGAGGGGATTGTTGAACTCTGATTTAATTGGCTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTAGACTATGAATCTAAGCGGGGACATATAGGGCTTGATTACTTTGGCCGCACTATATTTATTAAAATCTTGCCTGTAGGCATTCACATGGGTAGGCTTGAATCTGTGTTAAATCTTTCGTCTACATCTGCTAAGCTAAAAGAGGTTCAGGAAGAGTTTAAGGATAAGAAAGTAATTCTTGGTGTTGATGACATGGATATTTTTAAGGGCATTAGTCTGAAACTTCTAGCTGTGGAGCATCTGCTGCAGCAGAATCCAGATTTGCAGGGCAAAGTTGTCCTAGTTCAAATTGTAAATCCTGCAAGGGGCTCAGGGAAGGATGTTCAGGAAGCAAAGAATGAAACATATTCAATTGCCCAGAGGATCAATGATACATATAGCTCAAATAATTATCAGCCAGTCATTCTCATTGACCGTCCTGTTCCTCACTTTGAGAAGAGTGCCTATTATGCTGTAGCTGAATGTTGCATTGTCAATGCTGTAAGGGATGGTATGAACTTAGTCCCATACAAATATATTGTCTGCAGACAGGGAACTGCTCAACTAGATGAAGCATTGGGTAGAAAAAGTGATTCTCCTTGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGTGGGGCAATAAGGGTCAATCCCTGGAACATAGATGCCGTAGCCGATGCTATGTATGCAGCCCTGACTATGAGTGATTCAGAGAAGCAGTTGCGCCATGAGAAACACTATCGGTATGTGAGTTCTCATGATGTGGCATATTGGGCGCGCAGCTTTATGCTGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGATGCTGGGGATTTGGTTTGGGCTTGGGGTTCAGAGTTGTTTCTCTTTCTCATGGTTTTAGGAAGTTGTCAGTTGACCATATTGTTTCAGCATACAAGAGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTACCACAGTCTTCCATAAGTAAAAACCCCAGCCCTGAAGTCATCTCCGTCTTAAATGCTCTATGTAACGATCCCAAGAATATTGTGTTCATTGTTAGTGGGAGGGGAAAGGATTCACTGAGTGAATGGTTTACATCATGCCAAATGCTGGGACTTGCAGCAGAACATGGGTACTTTTTAAGGTGGAACAAAGATTCTGAATGGGAAGCAAGTCACTTGTCTGCAGACCTTGATTGGAAAAAGATGGTGGAACCTGTCATGCAGTTGTATACAGAATCAACCGATGGTTCTAATATTGAAGTTAAGGAGAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAATTGTTGGATCACTTGGAAAGTGTGCTTGCTAATGAACCAGCAGCTGTTACGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGCAAGGGTTTGGTAGCTGAACAGGTTCTTATGACCATGGTTAATGGTGCCAATCCACCAGATTTTGTGCTGTGCATTGGAGATGATAGGTCCGACGAGGACATGTTTGAGAGCATTTTGAGGACGGTTACGTGCCCGTCATTACCATCAGCTCCAGAGATCTTTGCCTGCACTGTGGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTTGATGATGCTTCTGATGTTGTGAAGTTGCTTCAGGGCCTTGCTGCTTCATCCAATCCAAAACCCAGGCTTCTTGCTCATTCTCAAGTCTCTTTTGAGAGCACAGTTTGA	2586	0.4238	MASRSYANLFDLASGDFLDFPCPPRALPRVMTVPGIISDLDGYGCNDGDSDVSSSGCRERKIIVANMLPVQAKRDIETAKWVFSWDEDSILLQLKDGFSADTEVIYVGSLKVEIDACEQDAVAQRLLDEFNCVPTFLPHDLQKRFYLGFCKQQLWPLFHYMLPICPDHGDRFDRILWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLSSTSAKLKEVQEEFKDKKVILGVDDMDIFKGISLKLLAVEHLLQQNPDLQGKVVLVQIVNPARGSGKDVQEAKNETYSIAQRINDTYSSNNYQPVILIDRPVPHFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQLDEALGRKSDSPCTSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMYAALTMSDSEKQLRHEKHYRYVSSHDVAYWARSFMLDLERACKDHYTKRCWGFGLGLGFRVVSLSHGFRKLSVDHIVSAYKRTNRRAIFLDYDGTVVPQSSISKNPSPEVISVLNALCNDPKNIVFIVSGRGKDSLSEWFTSCQMLGLAAEHGYFLRWNKDSEWEASHLSADLDWKKMVEPVMQLYTESTDGSNIEVKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAAVTRGQHIVEVKPQGISKGLVAEQVLMTMVNGANPPDFVLCIGDDRSDEDMFESILRTVTCPSLPSAPEIFACTVGRKPSKAKYFLDDASDVVKLLQGLAASSNPKPRLLAHSQVSFESTV*	862

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g2406	861	Gene3D	Glycogen Phosphorylase B;	54	312	-	-
	Gso8g2406	861	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED	1	852	-	-
	Gso8g2406	861	Pfam	Trehalose-phosphatase	595	829	IPR003337	GO:0003824\|GO:0005992
	Gso8g2406	861	CDD	GT20_TPS	60	545	IPR001830	GO:0003824\|GO:0005992
	Gso8g2406	861	TIGRFAM	T6PP: trehalose-phosphatase	590	839	IPR003337	GO:0003824\|GO:0005992
	Gso8g2406	861	Pfam	Glycosyltransferase family 20	60	545	IPR001830	GO:0003824\|GO:0005992
	Gso8g2406	861	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	60	549	-	-
	Gso8g2406	861	SUPERFAMILY	HAD-like	592	840	IPR036412	-
	Gso8g2406	861	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	852	IPR001830	GO:0003824\|GO:0005992
	Gso8g2406	861	CDD	HAD_TPP	593	834	-	-
	Gso8g2406	861	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	593	794	IPR006379	-
	Gso8g2406	861	Gene3D	-	721	850	IPR023214	-
	Gso8g2406	861	Gene3D	-	591	709	IPR023214	-
	Gso8g2406	861	Gene3D	Glycogen Phosphorylase B;	313	529	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g2406	Gso-Chr8	40401050	40406438	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso8g2406	1	861	Trehalose Biosynthesis Gene Families	AT1G60140	73.751	0.0	1368

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g2406	K16055		-	gmx:100814952	1752.26