LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g2403	ATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAA	531	0.4991	MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGRGRGGEDTKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRSSYSPRGRRSPRRRSISPPWGRNYSRSPPYRPRRDSPYANAD*	177

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g2403	176	SUPERFAMILY	RNA-binding domain, RBD	3	82	IPR035979	GO:0003676
	Gso8g2403	176	Gene3D	-	76	149	-	-
	Gso8g2403	176	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	174	-	-
	Gso8g2403	176	SUPERFAMILY	Retrovirus zinc finger-like domains	78	105	IPR036875	GO:0003676\|GO:0008270
	Gso8g2403	176	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Gso8g2403	176	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21	2	174	-	-
	Gso8g2403	176	MobiDBLite	consensus disorder prediction	109	176	-	-
	Gso8g2403	176	Gene3D	-	2	69	IPR012677	-
	Gso8g2403	176	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Gso8g2403	176	CDD	RRM_SRSF3_like	3	71	-	-
	Gso8g2403	176	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Gso8g2403	176	Pfam	Zinc knuckle	88	103	IPR001878	GO:0003676\|GO:0008270
	Gso8g2403	176	MobiDBLite	consensus disorder prediction	68	88	-	-
	Gso8g2403	176	SMART	c2hcfinal6	88	104	IPR001878	GO:0003676\|GO:0008270
	Gso8g2403	176	ProSiteProfiles	Zinc finger CCHC-type profile.	88	103	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g2403	Gso-Chr8	40341625	40344662	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso8g2403	2	59	Eukaryotic Initiation Factors Gene Family	AT1G22760	41.935	1.21e-06	45.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g2403	K12896		-	gmx:100813882	246.899