Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2393 ATGCTTTTCGAACAAGTCAGAACCGTTGAAATTGCTGAGAGGAATATTGTGGGTTTGTTGGAGAAGCCAGTTTTCCCGAATTCTAATACTAGAAAGCTTACTTGTGGCATCTGTTTTGGAACGTATCCTTGTGCACAAGTTGAATCTGTTGCTTGTGATCACCCTTACTGCTATTCATGTTGGGCAGGACATATTGGCACATCAACTAATGATAGTCTGGGATGTTTGGTGTTGAGATGTCCTAATCCCACTTGTGGTGCTGCTAATGGTCAAGATATGATTAACCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGACTATTACCTTCTCAAATCTTATATTGAAGACAACAAGAAGGATTTGAGTGAATCTGAGAATAACAGTGTAAAATGGCTTTTGGGTCATGCAGCTAAAGGGAGAGTGTTGAAGCTGGCAAGTAATGTGGACCTTACTGATGAATCTCAATCCACCTTGGTTGATCCTTTGAAGTAA 495 0.396 MLFEQVRTVEIAERNIVGLLEKPVFPNSNTRKLTCGICFGTYPCAQVESVACDHPYCYSCWAGHIGTSTNDSLGCLVLRCPNPTCGAANGQDMINLLASDEDKEKYDYYLLKSYIEDNKKDLSESENNSVKWLLGHAAKGRVLKLASNVDLTDESQSTLVDPLK* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2393 164 ProSiteProfiles TRIAD supradomain profile. 31 164 IPR044066 -
Gso8g2393 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 117 IPR013083 -
Gso8g2393 164 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 14 121 - -
Gso8g2393 164 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 14 121 IPR031127 GO:0004842|GO:0016567
Gso8g2393 164 SUPERFAMILY RING/U-box 31 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2393 Gso-Chr8 40199946 40209895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2393 14 120 C3H Transcription Factor Family AT2G31510 56.075 2.57e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2393 K11968 - gsj:114424178 343.969