Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2383 ATGCACCATTTAGGAGCTTCTTTCGACTCAGCTCAGTTCAAAAGTGCTCAGATAGTTTTTACCTATGAAATGGTTATGGAAATGACCAATGCCTTTTCTACTCAAAATGTTATTGGGGAAGGAGGGTTTGGGTTTGTTTACAAAGGTTGGCTGCCAGATGGAAAAGCAGTTGCAGTAAAGCAGCTTAAGGCCGGCGGTAGGCAGGGAGAAAGGGAATTCAAGGCTGAAGTGGAGATCATCAGCCGAGTTCATCATCGGCATTTGGTGTCATTAGTTGGTTATTGCATATGCGAGCAGCAAAGAATTCTTATCTATGAGTATGTTCCTAATGGAACACTCCATCATCACTTGCATGCAAGTGGAATGCCAGTATTGAATTGGGACAAGAGGCTAAAGATTGCAATAGGCGCTGCAAAGGGCCTGGCATATCTGCATGAGGACTGCTGCCAAAAGATTATTCACAGAGATATAAAGTCCGCAAACATACTTTTGGATAATGCTTATGAGGCACAGGTTGCTGACTTTGGACTTGCGAGGTTAGCCGATGCTTCCAATACCCATGTATCAACTAGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACTGGAAGGAAACCCGTTGATCAAACTCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGACACGTGATTTTAGTGATCTAATAGATCCAAGACTCAAAAAACACTTTGTGGAGAATGAAATGCTCAGAATGGTTGAGGTGGCCGCCGCTTGTGTTCGCCACTCAGCTCCTAGACGGCCTCGTATGGTTCAGGTGGTAAGATCCTTGGATTGTGGAGACGAAAGTTCTGATCTATCTAATGGGGTGAAATATGGTCATAGCACGGTTTATGATTCTGGTCAATATGAAAAAGAAATTATGCTATTCAGAAGGTTGGCCAATGGAACCTTTGTTGATTCTGATTTTGAGATATATAGTAGAGAATACAGTTTGTCAAGAGACACCTCAATGACCTCAAGAGGATCCCACCAAGAATTGATACGACATAGTTCTAGTGGGAGTTTGAATCTAGAGCTATCAACATGCATAGGACCAGTATTGAATGAAAACAGGGATTGA 1206 0.4312 MHHLGASFDSAQFKSAQIVFTYEMVMEMTNAFSTQNVIGEGGFGFVYKGWLPDGKAVAVKQLKAGGRQGEREFKAEVEIISRVHHRHLVSLVGYCICEQQRILIYEYVPNGTLHHHLHASGMPVLNWDKRLKIAIGAAKGLAYLHEDCCQKIIHRDIKSANILLDNAYEAQVADFGLARLADASNTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDQTQPLGDESLVEWARPLLLRAIETRDFSDLIDPRLKKHFVENEMLRMVEVAAACVRHSAPRRPRMVQVVRSLDCGDESSDLSNGVKYGHSTVYDSGQYEKEIMLFRRLANGTFVDSDFEIYSREYSLSRDTSMTSRGSHQELIRHSSSGSLNLELSTCIGPVLNENRD* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2383 401 Gene3D Phosphorylase Kinase; domain 1 3 107 - -
Gso8g2383 401 SMART serkin_6 32 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2383 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Gso8g2383 401 ProSitePatterns Protein kinases ATP-binding region signature. 38 60 IPR017441 GO:0005524
Gso8g2383 401 Gene3D Transferase(Phosphotransferase) domain 1 108 323 - -
Gso8g2383 401 SUPERFAMILY Protein kinase-like (PK-like) 13 305 IPR011009 -
Gso8g2383 401 ProSiteProfiles Protein kinase domain profile. 32 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2383 401 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 5 375 - -
Gso8g2383 401 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 5 375 - -
Gso8g2383 401 CDD STKc_IRAK 38 306 - -
Gso8g2383 401 Pfam Protein tyrosine and serine/threonine kinase 34 305 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2383 Gso-Chr8 40023724 40028321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2383 5 380 Trihelix Transcription Factor Family AT1G70460 68.351 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso8g2383 PK_Tyr_Ser-Thr 4.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2383 - - gmx:100807794 802.357