Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2382 ATGAGTGGTTTGGGTGTTGTAGAGTGTCTTAGACCCCTTGTTAAGACCAATGCTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGACCCAACAAGGTTTATTGAGTGGGTAGGTTGCTGTTGTAGAGGGAGTTGTAGTGTGAACATTGATGTGGTGAAGCCTGAAGAGGAAAAGGGTGAAGTGTGCAACTTGGCTCAAAGTTGCAGGGATGATCATTTTCATTTTCAGCATCTAGTTAGAACAAAGGCTTGTAAAGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAGGTTGCCATATCACAACAAGCAAGATGGCTTACCCAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAAAACCTGATTCCAATGGATATGAATATCGTAGAGTTCATAACAGCACATGGTTGTGTCTCTTTAGAGCAAGAAGCCATATCTGCACAGAGCTACACCAGTCTGAACATCAATGAACATCTGCCATTAAGGGAACAATACTCACATTGGTCACCACACATGCCAACTTTAACTCCTAGTGTCCATCAGCCTGCAACGAGACAGTGCAGCTCCCATCCTAGCATTGAAGGACCATCCAGTGGGTCTAATCCTTCAACTGAAGAACCATCATTTGATTCAAAGTTTGCTTCCTTGATTCCACATGAATATCTGAAACCACCAGTTAAAAAATCTCCCATCCCCAAAACTGAAACGCCCAAGTACAACAAAACTTCAGGGAAATGGCAGAGAGGTTTAAGTTCCCATTGTAGCAATGAGGAAGACGATGAATCAAAATCAGTCAAGGAGTCTCAGAAGGAAGTTTACCAGGCTAAGAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATAAAAAAAGGGCTTTTTACACTGCGGTCTCTAGTCCCAAGGATAACCAAGATGGATAGAGCTGCAATTCTTGCCGACGCGGTTGACCATATAAAGGAATTGCAAACACAAGTAAGAGAACTTAAAGATGAGGTCAGGGATTTGGAAGAACAGGAATGTGAGAAGAACACGCCACAATTGATGATAACAAAAGGCAAAAAACCAGAAGGAACCAGAAGTAACCCTCCTCTTAATCAAAGTTCTTCTGGTTGCACTAAAAAGATGCAAATGGAGCAGGTGCAAGTAGAAGTGCATCACATTAGCAAGACAGATTTCTTAATTAAGTTATGCAGTGAGCAGACGCAAGGTGGGTTCTCAAAGTTGATGGAAGCTATACATTCAATTGGACTAAAGGTGGATAGTGCCAATATGACCACACTTGATGGCAAAGTCCTTAACATTCTGACGGCTAAGGCAAACAAACAGGATATTCACCCAACTAAACTTAAAGAGTATTTAATACAGAAGACAAGCGATGATAGGCAAAGTAGCAAACAAGTTCGAGAAAATGGTGGTGATATGAAGAGTTCAAGAAAGTAA 1494 0.4163 MSGLGVVECLRPLVKTNAWDYVVVWKYGDDPTRFIEWVGCCCRGSCSVNIDVVKPEEEKGEVCNLAQSCRDDHFHFQHLVRTKACKALAQLPFALSLYSGVHGEVAISQQARWLTQDSIGTQVLIPIVGGLIELFTENLIPMDMNIVEFITAHGCVSLEQEAISAQSYTSLNINEHLPLREQYSHWSPHMPTLTPSVHQPATRQCSSHPSIEGPSSGSNPSTEEPSFDSKFASLIPHEYLKPPVKKSPIPKTETPKYNKTSGKWQRGLSSHCSNEEDDESKSVKESQKEVYQAKNLVTERNRRNKIKKGLFTLRSLVPRITKMDRAAILADAVDHIKELQTQVRELKDEVRDLEEQECEKNTPQLMITKGKKPEGTRSNPPLNQSSSGCTKKMQMEQVQVEVHHISKTDFLIKLCSEQTQGGFSKLMEAIHSIGLKVDSANMTTLDGKVLNILTAKANKQDIHPTKLKEYLIQKTSDDRQSSKQVRENGGDMKSSRK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2382 497 MobiDBLite consensus disorder prediction 253 269 - -
Gso8g2382 497 MobiDBLite consensus disorder prediction 188 228 - -
Gso8g2382 497 MobiDBLite consensus disorder prediction 472 497 - -
Gso8g2382 497 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 65 476 - -
Gso8g2382 497 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 151 IPR025610 -
Gso8g2382 497 Gene3D - 279 357 IPR036638 GO:0046983
Gso8g2382 497 MobiDBLite consensus disorder prediction 241 288 - -
Gso8g2382 497 MobiDBLite consensus disorder prediction 368 389 - -
Gso8g2382 497 MobiDBLite consensus disorder prediction 270 288 - -
Gso8g2382 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Gso8g2382 497 PANTHER TRANSCRIPTION FACTOR BHLH90 65 476 - -
Gso8g2382 497 Pfam Helix-loop-helix DNA-binding domain 297 340 IPR011598 GO:0046983
Gso8g2382 497 Coils Coil 329 359 - -
Gso8g2382 497 SMART finulus 296 345 IPR011598 GO:0046983
Gso8g2382 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 356 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2382 Gso-Chr8 40019902 40023533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2382 6 462 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 31.076 4.58e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2382 bHLH-MYC_N 6.4e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2382 - - gsj:114423672 997.267