Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2358 ATGGAAGACGAAATGTACGGCGTGTCGTCCACGACGGAGTACTCGGACGGGGCGCTGATGACGCCGGAGAACATATTCCCGGCGGAGTACCACAGCTTCCTAATGTCCTCCGCCGCCCGGATTCCGATGTTCGGATCCGACGAGCTTCTCTCCGCCGTCACCGCCGGCAACGAAACCGAACCCTACCCTGGCGCCACCATCGCACCGGAAATTCAGCGCCAAAACGACGCCTCCTCTCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTTCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTTGCAAGAGAGACGTTGTTGTTTCCACGTGCGTTGAAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCTGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATCGAAACTCAGCTTACCGATCTCTGCAGTGGTTCTTCTCTTCTAACACTTTCCGATGATGGGGGTGTATCTTCAGAAGAAGGTTTTAGTGCTGGAGATGGTGATCCTCAAGATGGCCAATTACGGAGTGAAGATCGAGAGCTGAAGGATAGGCTTTTACGCAAGTTTGGAAGTCACATTGGTTATTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAGCTGCCCAAAGACGCAAGGCAAACACTACTTCAATGGTGGAATATTCACTACAAATGGCCATACCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAGCGTCACTGGAAACCATCTGAGAACATGCCGTTCTCTATGGTGGATGGTCTCACCGGTCGGTTCCTTACTGATGAATGA 966 0.5 MEDEMYGVSSTTEYSDGALMTPENIFPAEYHSFLMSSAARIPMFGSDELLSAVTAGNETEPYPGATIAPEIQRQNDASSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVVSTCVEADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCSGSSLLTLSDDGGVSSEEGFSAGDGDPQDGQLRSEDRELKDRLLRKFGSHIGYLKLEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSMVDGLTGRFLTDE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2358 321 Gene3D - 237 307 - -
Gso8g2358 321 Pfam KNOX1 domain 81 122 IPR005540 GO:0003677|GO:0005634
Gso8g2358 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 311 - -
Gso8g2358 321 ProSitePatterns 'Homeobox' domain signature. 276 299 IPR017970 GO:0000981|GO:0006355
Gso8g2358 321 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Gso8g2358 321 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Gso8g2358 321 Pfam ELK domain 218 239 IPR005539 GO:0003677
Gso8g2358 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 3 311 - -
Gso8g2358 321 Pfam Homeobox KN domain 258 297 IPR008422 GO:0003677|GO:0006355
Gso8g2358 321 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Gso8g2358 321 SMART ELK_2 218 239 IPR005539 GO:0003677
Gso8g2358 321 ProSiteProfiles 'Homeobox' domain profile. 238 301 IPR001356 GO:0003677
Gso8g2358 321 SMART HOX_1 240 305 IPR001356 GO:0003677
Gso8g2358 321 ProSiteProfiles ELK domain profile. 218 238 IPR005539 GO:0003677
Gso8g2358 321 SUPERFAMILY Homeodomain-like 239 312 IPR009057 -
Gso8g2358 321 CDD homeodomain 250 302 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2358 Gso-Chr8 39589146 39597997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2358 3 321 Homeobox Transcription Factor Family AT1G23380 66.767 1.95e-147 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso8g2358 KNOX2 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2358 - - gmx:100803730 637.106